SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83024

Length: 572 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene83024
CCACATTGTAATGAGCTTTCAAATTGATCACTAAATTCTTTAGTCTAAAATTCCAAACCAAGAGAATAATAATGAATCTTGGGCAAAATATTATCTCCTACTGGAAACAACAATCACATTTCCACTGCAGAAGACAGCAGTCTTGCTAAAAAACTGACAAATGAACCAAGTAAACAGAAGACCAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAAGTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTGTGTATCCATCACCACAGGTCTCAACTTCGGTCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGAAGCATCTCGGTCGGGGCAGCTTTGAAGTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTCATTGGTATGTGGGCGAGGGT

Ace file of the UniGene sp_v2.0_unigene83024

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: tubulin alpha-8 chain-like n=1 Tax=Meleagris gallopavo RepID=UPI0002034995	-	-	2.0e-31	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	alpha-tubulin	-	-	5.381e-40	93%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 62 aas, your sequence is shorter than subject: 149 - 319

Fln protein: PHCNELSN*SLNSLV*NSKPRE***ILGKILSPTGNNNHISTAEDSSLAKKLTNEPSKQKTNCTGLQGFLVFNAVGGGSGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEASRSGQL*

Protein Length: 150

Fln nts: CCACATTGTAATGAGCTTTCAAATTGATCACTAAATTCTTTAGTCTAAAATTCCAAACCAAGAGAATAATAATGAATCTTGGGCAAAATATTATCTCCTACTGGAAACAACAATCACATTTCCACTGCAGAAGACAGCAGTCTTGCTAAAAAACTGACAAATGAACCAAGTAAACAGAAGACCAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAAGTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTGTGTATCCATCACCACAGGTCTCAACTTCGGTCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGAAGCATCTCGGTCGGGGCAGCTTTGAAGTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTCATTGGTATGTGGGCGAGGGT

Fln Alignment:

AllPineV4_rep_c143045___KQKTNCTGLQGFLVFNAVXXXXXXXXXXXXXERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEA
C0PRI6_______________KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain