SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82912

Length: 509 nt

UniGene Fasta

>sp_v2.0_unigene82912
ATGGGTCCACCACATGGATTTGTCTCACTGCGTGAAATTGAAGAGGTTGCCGGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGGACCTGAATGGGTGCACTCAATTGGAGAAGCTGCCAGATTCTTTCGGCAGATTGTCGAACCTCCACAGCTTGAAGCTAACTCGGTGCAAGGAAATGGAGAGGCTGCTAGATTCTTTCGGCAACTTGTCGAACCTTCACAGCTTGGAAGTGACTTGGTGCGTTCCTGCATTGACGGTTTCGACGATTGCTGTATCAATTGCAACTATATTTGCAACTATGGTGTCCCAAATTGCGCTTGGGATGAGAGAGTAGTAGAGAGGCTGCGCCAGCAATGCGACTCTGGATTTAGGTTGGAGGAACCAAATCGAAGTTGAAATGAAAGTGTTAAATTCGCAATCTAAAAGCAGAGAGACTAAAACAGAAGCATATGCATGATTGTAATATAAATGGTCTTTTCACCGGTAAAGAAATGGGGTCCATC

Ace file of the UniGene sp_v2.0_unigene82912

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J2_PINTA	-	-	9.0e-17	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	probable disease resistance protein at5g66900-like	-	-	3.66222e-27	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 214 aas, your sequence is shorter than subject: 109 - 482

Fln protein: MDLSHCVKLKRLPDSFGSLSNLHSLDLNGCTQLEKLPDSFGRLSNLHSLKLTRCKEMERLLDSFGNLSNLHSLEVTWCVPALTVSTIAVSIATIFATMVSQIALGMRE*

Protein Length: 110

Fln nts: ATGGGTCCACCAC_-_ATGGATTTGTCTCACTGCGTGAAATTGAAGAGGTTGCCGGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGGACCTGAATGGGTGCACTCAATTGGAGAAGCTGCCAGATTCTTTCGGCAGATTGTCGAACCTCCACAGCTTGAAGCTAACTCGGTGCAAGGAAATGGAGAGGCTGCTAGATTCTTTCGGCAACTTGTCGAACCTTCACAGCTTGGAAGTGACTTGGTGCGTTCCTGCATTGACGGTTTCGACGATTGCTGTATCAATTGCAACTATATTTGCAACTATGGTGTCCCAAATTGCGCTTGGGATGAGAGAGTAGTAGAGAGGCTGCGCCAGCAATGCGACTCTGGATTTAGGTTGGAGGAACCAAATCGAAGTTGAAATGAAAGTGTTAAATTCGCAATCTAAAAGCAGAGAGACTAAAACAGAAGCATATGCATGATTGTAATATAAATGGTCTTTTCACCGGTAAAGAAATGGGGTCCATC

Fln Alignment:

AllPineV4_rep_c142713___VHHMDLSHCVKLKRLPDSFGSLSNLHSLDLNGCTQLEKLPDSFGRLSNLHSLKLTRCKEMERLLDSFGNLSNLHSLEVTWC
D5AB91_______________LHHMDLSRCGKLERLPDSFGTLTNLHHIDLSNCGKLERLPDSFGSLTNLHHMNLVCCRKLKRLPDSLGNLTNLHHINLTLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain