SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82907

Length: 456 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene82907
CGTCGTGACCTTGGCTGTCACTCAATTTAAGCGTGTGATTGGCTCTCTTCGTGGCCATGATGATAAGATACGAGTAGTGCTCAACAAAGCAGATCAGATTGATACGCAACAGTTGATGAGAGTATATGGGGCATTGATGAAAGTTTTTCCGTATATGGATTATGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCAAAGGCGCAAGGGTGGGAGACTGACAATGTTGAAGAAATAGCCCTAAAGATGTCAGCACTGCCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAATATTGTTGATACAAATGGAGCAGGAGATGCATTTGTAGGAGGCTTTTTAGCTCAATTGGCGCTAGGTAAAACTATTGAG

Ace file of the UniGene sp_v2.0_unigene82907

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adenosine kinase isoform 2T [Nicotiana tabacum] gb\|AAU14835.1\| adenosine kinase isoform 2T [Nicotiana tabacum]	-	-	7.0e-39	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	adenosine kinase	-	-	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	EPS15 homology (EH)	IPR000261	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Adenosine kinase	IPR001805	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0M6

Fln msg: Overlapping hits, possible frame ERROR between 376 and 376, Distance to subject end: 28 aas, your sequence is shorter than subject: 152 - 341

Fln protein: VVTLAVTQFKRVIGSLRGHDDKIRVVLNKADQIDTQQLMRVYGALMKVFPYMDYVFGNETEARTFAKAQGWETDNVEEIALKMSALPKATGTHKRIAVITQGADPVVIAEDGKVTLFPVILIPKxxIVDTNGAGDAFVGGFLAQLELGKTIE

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTAAGCGTGTGATTGGCTCTCTTCGTGGCCATGATGATAAGATACGAGTAGTGCTCAACAAAGCAGATCAGATTGATACGCAACAGTTGATGAGAGTATATGGGGCATTGATGAAAGTTTTTCCGTATATGGATTATGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCAAAGGCGCAAGGGTGGGAGACTGACAATGTTGAAGAAATAGCCCTAAAGATGTCAGCACTGCCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGxxxxxxATTGTTGATACAAATGGAGCAGGAGATGCATTTGTAGGAGGCTTTTTAGCTCAATTGGaGCTAGGTAAAACTATTGAG

Fln Alignment:

AllPineV4_rep_c142689___ALMKVFPYMDYVFGNETEARTFAKAQGWETDNVEEIALKMSALPKATGTHKRIAVITQGADPVVIAEDGKVTLFPVILIPKENIVDTNGAGDAFVGGFLAQLELGKTIE
A9P0M6_______________ALMKVFPYMDYVFGNETEARTFARVQGWETDNVEEIALKMSALPKATGTHKRIAVITQGADPTVIAEDGKVTLFPVILIPKENIVDTNGAGDAFVGGFLSQLVLGKPIE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
145	66	33			0.997461
155			66	33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain