SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82906

Length: 795 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82906

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb\|AAV92353.1\| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb\|AAV92354.1\| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb\|AAV92355.1\| alpha tubulin 1 [Pseudotsuga menziesii var. m	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	tubulin alpha	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT17

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 265 - 451

Fln protein: GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVHYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFLKRVRILLPSRRTMRRLALSLQRERKVSEGD

Protein Length: 266

Fln nts: GGTACTTACCGTCAGCTTTTCCATCCTGAACAGCTTATCAGCGGCAAGGAAGATGCGGCCAACAACTTTGCCCGTGGTCATTACACCATTGGCAAGGAAATTGTGGACCTCTGCCTGGACCGTATTCGGAAGCTGGCTGACAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAACTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGCACTACGGCAAAAAATCCAAACTTGGATTCACTGTGTATCCATCACCACAGGTCTCAACTTCGGTCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGTGGATGTAACGGAGTTCCAAACAAACTTGGTCCCGTATCCTCGAATCCACTTTATGCTTTCGTCATACGCCCCTGTTATCTCTGCAGAAAAGGCCTACCATGAGCAGCTTTCTGTGGCAGAAATTACTAACAGTGCATTTGAGCCGTCCTCCATGATGGCCAAGTGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTTCATTGGTATGTGGGCGAGGGTATGGAAGAGGGCGAGTTTCTGAAGCGCGTGAGGATCTTGCTGCCCTCGAGAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGAGGGAGAGGAAGGTGAGTGAGGGAGAC

Fln Alignment:

AllPineV4_rep_c142688___GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVHYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLD-------------------------------------------NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCD---------------------------LAKVQRAV----------------------------------CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF
C0PT17_______________GPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGALNVDINEFQTNLVPFPRIHFMLSSYAPVVSKEKAYHEALSVKEITNSVFEASNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSMIKTKRAVQFVDWCPTGFKCGINYQPPAVVPGGDLCKVPRAVCMISNNTAVVEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
441	33		66		0.997452
444		66	33		0.997452
445	66		33		0.997452
554			66	33	0.997457
555	33	66			0.997457
558	66			33	0.997457
559			66	33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain