SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82844

Length: 564 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene82844
CGTCGTGACCTTGGCTGTCACTCATTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATCATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTG

Ace file of the UniGene sp_v2.0_unigene82844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative elongation factor 1-alpha (Fragment) n=1 Tax=Prunus dulcis RepID=A7Y7K1_PRUDU	-	-	7.0e-25	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	translation elongation factor-1 alpha	-	-	1.54254e-40	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.54254e-40	98%
Blast2go	response to inorganic substance	GO:0010035	Biological Process	1.54254e-40	98%
Blast2go	protein binding	GO:0005515	Molecular Function	1.54254e-40	98%
Blast2go	neuronal cell body	GO:0043025	Cellular Component	1.54254e-40	98%
Blast2go	intracellular part	GO:0044424	Cellular Component	1.54254e-40	98%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMD8

Fln msg: Distance to subject end: 77 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 71 - 167

Fln protein: RGLDTTRTRFLLCPSDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRS

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATCATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTG

Fln Alignment:

AllPineV4_rep_c142502___SDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRS
B8LMD8_______________SDSKNDPAREAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIMTKVDRRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain