SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82790

Length: 843 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82790

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 domain containing protein	-	-	4.06377e-44	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
216	75		25		0.996479
217			75	25	0.996479
220	75			25	0.996479
222	25			75	0.996479
223		25		75	0.996479
224		25	75		0.996479
228			33	66	0.997452
231		66	33		0.997452
232	66			33	0.997452
235		33		66	0.997452
236			66	33	0.997452
237		33		66	0.997452
238	33			66	0.997452
263	33		66		0.997452
272	66			33	1.0
273	66	33			1.0
274	66		33		1.0
278	33	66			1.0
279		80	20		0.995493
280		33	66		1.0
281	60			40	1.0
283	60		40		1.0
286			60	40	1.0
296	80	20			0.995493
297	20	80			0.995493
356		83	16		0.994512
358		16	83		0.994513
368	40		60		1.0
378	83		16		0.994512
379			83	16	0.994512
380	83	16			0.994512
381	83		16		0.994512
382	83			16	0.994512
385	83	16			0.994512
386		16	83		0.994512
387		83		16	0.994512
390		83	16		0.994513
391		16	83		0.994513
392	83			16	0.994513
394	83			16	0.994515
396	66	16			0.988813
399		20		80	0.995493
421		33	66		1.0
545	50		50		1.0
557	25		75		0.996483
566		25		75	0.996475
567	75		25		0.996473
622	60		40		1.0
649		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
148	159	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain