SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82737

Length: 959 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82737

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GSK3/shaggy-like protein kinase n=1 Tax=Selaginella moellendorffii RepID=D8SX29_SELML	-	-	5.0e-33	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	3.57331e-43	95%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
614			50	50	1.0
615	50			50	1.0
617		50	50		1.0
621	50		50		1.0
623		50		50	1.0
624	50			50	1.0
625		42		42	1.0
626		50	50		1.0
627		50	50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
580	593	GAG GAG GAG GAG GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
614			50	50	1.0
615	50			50	1.0
617		50	50		1.0
621	50		50		1.0
623		50		50	1.0
624	50			50	1.0
625		42		42	1.0
626		50	50		1.0
627		50	50		1.0

Position	A %	C %	G %	T %	Probability
614			50	50	1.0
615	50			50	1.0
617		50	50		1.0
621	50		50		1.0
623		50		50	1.0
624	50			50	1.0
625		42		42	1.0
626		50	50		1.0
627		50	50		1.0

Position	A %	C %	G %	T %	Probability
614			50	50	1.0
615	50			50	1.0
617		50	50		1.0
621	50		50		1.0
623		50		50	1.0
624	50			50	1.0
625		42		42	1.0
626		50	50		1.0
627		50	50		1.0