SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82706

Length: 397 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene82706
CATGGTATCAGAGATTGGACCCCATATTCAATTCCCCCCTAGTTGTGTTTTGGGGCCATGGAAGAATCACTGCATCTCTATGAAATTCGTAATTTCTACTATAAAGCTGAGTCTCCACTGATTTAGAATGTTTACCAATCCCTGAGAATTTTGGTGTAATAGAAAAGCTCGATATCAACTGGACAGCCTGCCTTTGAAAATTTAATGCCTGATTAGAGCAATGGCTTTAATTTATATGTCCGTCTAGTTATCGCTTGCTTTTGTAGCAGAATTGAGCTTGAACTTGCAGGCTTTCGTGCCATAGGATTTAACGTACCCATTTCGCTTTTCTTTGCGGTTGTTGTCAACGTAGCCTTCGGCTACTATACTCTTCCTGTAAGTATATTGCTAAAAGTAA

Ace file of the UniGene sp_v2.0_unigene82706

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caleosin domain containing protein	-	-	3.0e-06	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P193

Fln msg: Distance to subject end: 121 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 60 - 242

Fln protein: SNGFNLYVRLVIACFCSRIELELAGFRAIGFNVPISLFFAVVVNVAFGYYTLPVSILLKV

Protein Length: 61

Fln nts: CATGGTATCAGAGATTGGACCCCATATTCAATTCCCCCCTAGTTGTGTTTTGGGGCCATGGAAGAATCACTGCATCTCTATGAAATTCGTAATTTCTACTATAAAGCTGAGTCTCCACTGATTTAGAATGTTTACCAATCCCTGAGAATTTTGGTGTAATAGAAAAGCTCGATATCAACTGGACAGCCTGCCTTTGAAAATTTAATGCCTGATTAGAGCAATGGCTTTAATTTATATGTCCGTCTAGTTATCGCTTGCTTTTGTAGCAGAATTGAGCTTGAACTTGCAGGCTTTCGTGCCATAGGATTTAACGTACCCATTTCGCTTTTCTTTGCGGTTGTTGTCAACGTAGCCTTCGGCTACTATACTCTTCCTGTAAGTATATTGCTAAAAGTAA

Fln Alignment:

AllPineV4_rep_c141973___GFRAIGFNVPISLFFAVVVNVAFGYYTLP
A9P193_______________GFRAIGFNVLFSLFVAVIINVAFSYYTLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain