SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82704

Length: 519 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene82704
ATGGGCCACTTTATGCTTTCGTCATACGCCCCTGTTATCTCTGCAGAAAAGGCCTACCATGAGCAGCTTCCTGTGGCAGAAATTACTAACAGTGCATTTTAGCCGTCCTCCATGATGGCCAAGTGCGATCCTCGCCACGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGAAGCTATTTACGATATTTGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAAGAAACGAGCATTTGTTCATTGGTATGTGGGCGAGGGTATGGAACATT

Ace file of the UniGene sp_v2.0_unigene82704

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH	-	-	93%
FL-Next	tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii.	-	-	96%
Blast2go	alpha tubulin 1	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5ME66

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 484 and 465, Distance to subject end: 36 aas, your sequence is shorter than subject: 174 - 451

Fln protein: MGHFMLSSYAPVISAEKAYHEQLPVAEITNSAF*PSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIxxxCMISNSTSVAEVFSRIDHKFDLxxxxxxxxxVHWYVGEGMEH

Protein Length: 175

Fln nts: ATGGGCCACTTTATGCTTTCGTCATACGCCCCTGTTATCTCTGCAGAAAAGGCCTACCATGAGCAGCTTCCTGTGGCAGAAATTACTAACAGTGCATTTTAGCCGTCCTCCATGATGGCCAAGTGCGATCCTCGCCACGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGAGCCGTACAACAGCGTTCTCTCCACGCATTCTCTTCTGGAACACACCGATGTGGCCGTTCTCCTCGATAATGAAGCTATTTACGATATTxxxxxxxxxTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCAxxxxxxxxxxxxxxxxxxxxxxxxTTGTTCATTGGTATGTGGGCGAGGGTATGGAACATT

Fln Alignment:

AllPineV4_rep_c141969___HFMLSSYAPVISAEKAYHEQLPVAEITNSAF*PSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVEPxxxxxxxxxAVCMISNSTSVAEVFSRIDHKFDLxxxxxxxxHWYVGEGME
Q5ME66_______________HFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPxxxxxxxxxAVCMISNSTSVAEVFSRIDHKFDLxxxxxxxxHWYVGEGME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain