SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82666

Length: 1034 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene82666 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH	-	-	100%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	98%
Blast2go	tubulin alpha-2 alpha-4 chain	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	98%
Blast2go	cellular response to gravity	GO:0071258	Biological Process	98%
Blast2go	microtubule-based process	GO:0007017	Biological Process	98%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	98%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	98%
Blast2go	cytosol	GO:0005829	Cellular Component	98%
Blast2go	cell wall	GO:0005618	Cellular Component	98%
Blast2go	protein complex	GO:0043234	Cellular Component	98%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	98%
Blast2go	chloroplast	GO:0009507	Cellular Component	98%
Blast2go	cytoskeletal part	GO:0044430	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
350	80			20	0.995493
354	80			20	0.995494
355	80		20		0.995494
359	20		20		0.99255
360	60	20			0.99255
365	60	20			0.99255
366			75	25	0.996473
367		25		75	0.996473
368		20	80		0.995493
369	75	25			0.996473
370		75		25	0.996473
371	60			20	0.99255
373	25	50	25		0.995533
375	80		20		0.995493
378		25	75		0.99649
379	25		75		0.99649
381		75	25		0.99649
856	25	75			0.996486
857	25	75			0.996486
907	50		50		1.0
909	50		50		1.0
923	33		66		0.997453
1024		33	66		0.997452
1025	66	33			0.997452
1027			66	33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain