SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82659

Length: 333 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene82659
ATGGGGTAGTCGGAGATCGATCTTGAAATCCAAACACTGAGAGACTAGAGTGTTGTTTTCTCTATTTATTCCAATCACATATTGCAGTAATTCATTACTAGTTGAAAATGTCGATAATTCCCAGCTTTTTGGCCAGAGGTCATTCGATCCCTTCTCCTTGGATGTATGGGATCCTTTCCAAGCATTCACAGATTTGGCCAGCGGGGGACCATCGGGGCAATTTGTAAGGGAGACTTCTGCCATAGCCAATACTCAGATCGACTGGAAGGAAGCGCCAGAAGCGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGAT

Ace file of the UniGene sp_v2.0_unigene82659

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	1.0e-21	80%
FL-Next	tr=Small heat-shock protein; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	82%
Blast2go	low molecular weight heat-shock protein	-	-	9.31558e-22	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8L5D5

Fln msg: Separated hits, possible frame ERROR between 268 and 279, Distance to subject end: 51 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 98 - 161

Fln protein: ETRVLFSLFIPITYCSNSLLVENVDNSQLFGQRSFDPFSLDVWDPFQAFTDLASGGPSGQFVRETSAIANTQIDWxxxxxKRSKEEEHKNDKWHRIER

Protein Length: 99

Fln nts: ATGGGGTAGTCGGAGATCGATCTTGAAATCCAAACACTGAGAGACTAGAGTGTTGTTTTCTCTATTTATTCCAATCACATATTGCAGTAATTCATTACTAGTTGAAAATGTCGATAATTCCCAGCTTTTTGGCCAGAGGTCATTCGATCCCTTCTCCTTGGATGTATGGGATCCTTTCCAAGCATTCACAGATTTGGCCAGCGGGGGACCATCGGGGCAATTTGTAAGGGAGACTTCTGCCATAGCCAATACTCAGATCGACTGGAAxxxxxxxxxxxxGAAGCGCAGCAAAGAAGAAGAGCACAAGAACGACAAATGGCACCGCATTGAGCGAT

Fln Alignment:

AllPineV4_rep_c141792___FGQRS---FDPFSLDVWDPFQAFTDLASGGPSGQFVRETSAIANTQIDWKxxxxKRSKEEEHKNDKWHRIER
Q8L5D5_______________FGRRSSSAFDPFSLDVWDPFRAFTDLAAGGPSGQFVNEASAVANTQIDWKxxxxERSKEEEQKNDKWHRIER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain