SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82633

Length: 490 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82633
CTTGGTTGGGCGTTGTGGTGGCAGTGATGACTCCGTGGGGTGTTGTCACAACTGAGGGTGCCATATCGTGCAACCAGGTAGTGAGTGCCCTCACTCCATGTGCAGGATACCTAATTGGAAATGCAGCCACTCCTGCTGCCGCCTGTTGTCCTGCCTATCAGGCAAACTCATTTGGTGTCAAACTGGGGAAGGCTGCCAATCTTCCTGGGCTGTGCAAGGTCACTGACCTTAACGTCCCTATCAGTTCTAATGTCGACTGTTCTAAAATTCACTGACGAGGCCTGCTGATGATCGAATCTGGGCTGGTGGCTTAGTTAGATAATGTAGTACAAGTATGTTAATCAGTACATGAACTTAACTTGCTACATAAAATGTTGTATCCAGGGTTTTCCCGTTTGAGTGTTACGTATTACTCCTGGAAATGCCTTTAGGCGTTTTTTTAGTAATTTTAAATAAATAAATGGTGATGCCAGCCACGTTTAGCTTTTGC

Ace file of the UniGene sp_v2.0_unigene82633 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Picea sitchensis RepID=A9NJW4_PICSI	-	-	3.0e-28	62%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	nonspecific lipid transfer protein	-	-	8.00029e-36	77%

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NJW4

Fln msg: atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 83 - 123

Fln protein: MTPWGVVTTEGAISCNQVVSALTPCAGYLIGNAATPAAACCPAYQANSFGVKLGKAANLPGLCKVTDLNVPISSNVDCSKIH*

Protein Length: 84

Fln nts: CTTGGTTGGGCGTTGTGGTGGCAGTG_-_ATGACTCCGTGGGGTGTTGTCACAACTGAGGGTGCCATATCGTGCAACCAGGTAGTGAGTGCCCTCACTCCATGTGCAGGATACCTAATTGGAAATGCAGCCACTCCTGCTGCCGCCTGTTGTCCTGCCTATCAGGCAAACTCATTTGGTGTCAAACTGGGGAAGGCTGCCAATCTTCCTGGGCTGTGCAAGGTCACTGACCTTAACGTCCCTATCAGTTCTAATGTCGACTGTTCTAAAATTCACTGA___CGAGGCCTGCTGATGATCGAATCTGGGCTGGTGGCTTAGTTAGATAATGTAGTACAAGTATGTTAATCAGTACATGAACTTAACTTGCTACATAAAATGTTGTATCCAGGGTTTTCCCGTTTGAGTGTTACGTATTACTCCTGGAAATGCCTTTAGGCGTTTTTTTAGTAATTTTAAATAAATAAATGGTGATGCCAGCCACGTTTAGCTTTTGC

Fln Alignment:

AllPineV4_rep_c141669___LGVVVAVMTPWGVVTTEGAISCNQVVSALTPCAGYLIGNXXXXXXXXXXAY----------------------QANSFGVKLGKAANLPGLCKVTDLNVPISSNVDCSKIH
A9NJW4_______________VGLVVAVMTAWGVVRTEGAISCNQVVSALTPCAGYLIGNAATPAAACCPAIKGLDSQIKATPDRQAVCNCLKNQATSFGVKLGKAANLPGLCKVTDINVPVNPNVDCSKIH

SSRs (tot: 1)

Start position	End position	Sequence	Length
29	41	ATTT ATTT ATTT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain