SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82542

Length: 452 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene82542
GTCATGGAGGCGATTATCTCAGAACCCAAAAGGAGATGGAAAGCAACAAGCGTAAGGAGCGCCATGGCGAGTTCGGAGCTCTGCCTACTGTAGGCTTTGTTCTGCGTGAGAAGCCTGAGGTAAAAAAGGATCCTGAGAATGCTCGAAGTCCCAAGATAGAGGAGAAGATTGCTGTCCGCGGAATTTATGCGAAGCCTGAGGTAAAAATGGATCCTGAGACTTCCACAGCTGTGAGCGGCGGTCGTTATGCGAAGCCACTCAAGAAAAAGCAAGCCTAATCTAACCAGGCATTTCATGACCTGTTAGGGTGTGTATTGCAAGAGTTCGGTGTGTGTGTTTGCTTCACTTTACTGAATATGCCATAGATCCTATTTTCCCTACCCCTCTTACTGAGGCAGAAATACATGGATGAGGCAGAAATAAAGTGTTTTTAAGCATATTTGCTGGCAGAA

Ace file of the UniGene sp_v2.0_unigene82542

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abscisic acid and water-stress induced protein (Fragment) n=5 Tax=Pinus sylvestris RepID=B7TGM0_PINSY	-	-	6.0e-09	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	water-stress-inducible protein	-	-	1.975e-11	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKR4

Fln msg: your sequence is shorter than subject: 92 - 245

Fln protein: HGGDYLRTQKEMESNKRKERHGEFGALPTVGFVLREKPEVKKDPENARSPKIEEKIAVRGIYAKPEVKMDPETSTAVSGGRYAKPLKKKQA*

Protein Length: 93

Fln nts: GTCATGGAGGCGATTATCTCAGAACCCAAAAGGAGATGGAAAGCAACAAGCGTAAGGAGCGCCATGGCGAGTTCGGAGCTCTGCCTACTGTAGGCTTTGTTCTGCGTGAGAAGCCTGAGGTAAAAAAGGATCCTGAGAATGCTCGAAGTCCCAAGATAGAGGAGAAGATTGCTGTCCGCGGAATTTATGCGAAGCCTGAGGTAAAAATGGATCCTGAGACTTCCACAGCTGTGAGCGGCGGTCGTTATGCGAAGCCACTCAAGAAAAAGCAAGCCTAA___TCTAACCAGGCATTTCATGACCTGTTAGGGTGTGTATTGCAAGAGTTCGGTGTGTGTGTTTGCTTCACTTTACTGAATATGCCATAGATCCTATTTTCCCTACCCCTCTTACTGAGGCAGAAATACATGGATGAGGCAGAAATAAAGTGTTTTTAAGCATATTTGCTGGCAGAA

Fln Alignment:

AllPineV4_c141299___DYLRTQKEMESNKRKERHGEFGALPTVGFVLREKPEVKKDPENARSPKIEEKIAVR-----GIYAKPE--VKMDPETSTAVSGGR
A9NKR4_______________DYERAQREVKHDKRKEQGGEFGAMAAGGYALYEKHEAKTDPENARRHRIEEEVAAAAAVGGGGYAFHEHHEKKRDEEAEGASGGR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
186	33		66	0.998671
222	33		66	0.998671
234	66	33		0.998671

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain