SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82527

Length: 868 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82527

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	protein topless	-	-	1.80967e-34	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	1.80967e-34	69%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	1.80967e-34	69%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	1.80967e-34	69%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.80967e-34	69%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	1.80967e-34	69%
Blast2go	nucleus	GO:0005634	Cellular Component	1.80967e-34	69%
Blast2go	cytosol	GO:0005829	Cellular Component	1.80967e-34	69%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	G %	T %	Probability
587	66		33	0.997452
588	66	33		0.997452
589		33	66	0.997455
590		33	66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain