SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82439

Length: 408 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82439
GTACGCGATTGCATCTTCATGTTTATGTACTGATCAGTGCAGGAATATTTGGGCAATTATCTGATTCTTCGTGGGACGGAAGGGAGTGCTGAGGTTGGTCTGTATTTGCAACACCATCCTGGCGGCCTTCTCGCCCAATTTCTGGGTTCATTTGATTCTCCGTTTATTGACGGGAATTAGCACTGGCGGCGTTGGGCTGTCCTCCTTCGTTTTGGCAACTGAACCTGTCGGGCCGTGTAAGAGAGGACGTGTTGGCATGTCGACTTTGTACTTCTTTTCCCTCGGCATAGCTCTGCTTCCAGCTCTCTCCTACTTTTCTGCCAGCTGGAGATATCTGTACATAGTCGCTTCGGTTCCTTCGGCCTTGTATTGCCTTTTCGTTCTGCCATTTGTATTAGAGTCCCCGCC

Ace file of the UniGene sp_v2.0_unigene82439 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Major facilitator superfamily n=1 Tax=Medicago truncatula RepID=A2Q643_MEDTR	-	-	1.0e-36	63%
FL-Next	tr=Major facilitator superfamily; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	63%
Blast2go	solute carrier family 22 member 15-like protein	-	-	5.91908e-42	74%

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A2Q643

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 263 aas, your sequence is shorter than subject: 135 - 527

Fln protein: YAIASSCLCTDQCRNIWAII*FFVGRKGVLRLVCICNTILAAFSPNFWVHLILRLLTGISTGGVGLSSFVLATEPVGPCKRGRVGMSTLYFFSLGIALLPALSYFSASWRYLYIVASVPSALYCLFVLPFVLESP

Protein Length: 136

Fln nts: GTACGCGATTGCATCTTCATGTTTATGTACTGATCAGTGCAGGAATATTTGGGCAATTATCTGATTCTTCGTGGGACGGAAGGGAGTGCTGAGGTTGGTCTGTATTTGCAACACCATCCTGGCGGCCTTCTCGCCCAATTTCTGGGTTCATTTGATTCTCCGTTTATTGACGGGAATTAGCACTGGCGGCGTTGGGCTGTCCTCCTTCGTTTTGGCAACTGAACCTGTCGGGCCGTGTAAGAGAGGACGTGTTGGCATGTCGACTTTGTACTTCTTTTCCCTCGGCATAGCTCTGCTTCCAGCTCTCTCCTACTTTTCTGCCAGCTGGAGATATCTGTACATAGTCGCTTCGGTTCCTTCGGCCTTGTATTGCCTTTTCGTTCTGCCATTTGTATTAGAGTCCCCGCC

Fln Alignment:

AllPineV4_rep_c140891___VGRKGVLRLVCICNTI---LAAFSPNFWVHLILRLLTGISTGGVGLSSFVLATEPVGPCKRGRVGMSTLYFFSLGIALLPALSYFSASWRYLYIVASVPSALYCLFVLPFVLESP
A2Q643_______________LGRKGSLIVVCALNTIFGCLTAFSPNYWIYVLLRLLTGFSTGGVGLCAFVLATEPIGPSKRGMAGMSTFYFFSSGIAILSGIAYTFQTWRTLYIVSSIPSILYIILVLPFISESP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain