SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82429

Length: 470 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82429
GAAACATCTTCGTGTGAAGATTGATATTGGGAAGTTGTATTCAGAGGATTCTACAAGATGGCAAGAGATTCTTTCAGTTATCAATGTCGCCTCAAGCTTTGGCAACACTTGGCAACATTGTATGGACTAAAAGCCTAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAAACTGGCTCTTTCTCAATACAGTAATATCATAGTGCATTTGAGAAAGAGCCAGATTAGTCCACTTCCTCATATGCATTTGAGGAAGTGGACT

Ace file of the UniGene sp_v2.0_unigene82429 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein 70 isoform-1 (Fragment) n=1 Tax=Cucumis sativus RepID=A1BQJ1_CUCSA	-	-	1.0e-14	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	heat shock protein 70	-	-	2.51601e-18	97%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 126 - 651

Fln protein: KHLRVKIDIGKLYSEDSTRWQEILSVINVASSFGNTWQHCMD*KPKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQGAGGDVPGGGFGGVPPEGGPSSGGGAGPKIEEVD*

Protein Length: 127

Fln nts: GAAACATCTTCGTGTGAAGATTGATATTGGGAAGTTGTATTCAGAGGATTCTACAAGATGGCAAGAGATTCTTTCAGTTATCAATGTCGCCTCAAGCTTTGGCAACACTTGGCAACATTGTATGGACTAAAAGCCTAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAA___ACTGGCTCTTTCTCAATACAGTAATATCATAGTGCATTTGAGAAAGAGCCAGATTAGTCCACTTCCTCATATGCATTTGAGGAAGTGGACT

Fln Alignment:

AllPineV4_rep_c140864___AIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXXXXXXXXXXPKIEEVD
A9NXU2_______________AINGAISWLDQNQLAEVDEFEDKMKELEGICNPIIAKMYQGGSAPMGADDDDIPTSGGAGAGAGGRGPKIEEVD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain