SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82423

Length: 327 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82423
AATGTCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATTAAAGCTGTTGAAAAGAGGAACCTAGTGGTGCAAAGGTTCCAAGGCAGCAGCCAAAAAGAGTGAAATCGTGTTGATATTGCAGAGATTCCAACTGCCCCATCCGCAACGG

Ace file of the UniGene sp_v2.0_unigene82423 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb\|AAV92326.1\| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb\|AAV92327.1\| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi	-	-	4.0e-23	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	translation elongation factor-1 alpha	-	-	7.88639e-30	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P004

Fln msg: your sequence is shorter than subject: 93 - 113

Fln protein: CLGGIDKRVIERFEKEAAEMNKRSFKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKRNLVVQRFQGSSQKE*

Protein Length: 94

Fln nts: AATGTCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATTAAAGCTGTTGAAAAGAGGAACCTAGTGGTGCAAAGGTTCCAAGGCAGCAGCCAAAAAGAGTGA___AATCGTGTTGATATTGCAGAGATTCCAACTGCCCCATCCGCAACGG

Fln Alignment:

AllPineV4_rep_c140848___IDKRVIERFEKEAAEMNKRSFKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKRN
A9P004_______________VDRRSGKELEKEP--------KFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
251	25			75	0.996473
252		25	75		0.996473
254	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain