SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82404

Length: 483 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82404

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone H4 [Hyacinthus orientalis]	-	-	1.0e-38	98%
FL-Next	sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h4	-	-	0.0	100%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	100%
Blast2go	chromosome organization	GO:0051276	Biological Process	100%
Blast2go	protein binding	GO:0005515	Molecular Function	100%
Blast2go	nucleolus	GO:0005730	Cellular Component	100%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	100%
Blast2go	thylakoid	GO:0009579	Cellular Component	100%
Blast2go	chloroplast	GO:0009507	Cellular Component	100%
Blast2go	plasma membrane	GO:0005886	Cellular Component	100%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H4	IPR001951	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
134	11	88			0.92373
139	88		11		0.923589
250		12		87	0.99256

SSRs (tot: 1)

Start position	End position	Sequence	Length
396	408	TTTA TTTA TTTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain