SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82189

Length: 1205 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene82189 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aquaporin PIP2;2 n=16 Tax=rosids RepID=Q0MX13_VITVI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	aquaporin	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	80%
Blast2go	water transport	GO:0006833	Biological Process	80%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	80%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	80%
Blast2go	water channel activity	GO:0015250	Molecular Function	80%
Blast2go	vacuole	GO:0005773	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%
Blast2go	hydrogen peroxide transmembrane transport	GO:0080170	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ60

Fln msg: Overlapping hits, possible frame ERROR between 801 and 740,

Fln protein: MAAMGVEGGEQESRGYEDHATAPLLDSLELKRWSFYRATMAEFVATLLFLYITLTTVVENKRSKGTCGGVGLLGEASAFGGMIAVLVYCISAISGGHVNPAVTFALFLARKVSLPRALAYIVAQCLGALCGTALVRGMQGSFYASTGGGSNSVSTGYSKGTALLAEIIGTFVLVYTVLSVADPKRKAHHSHIPVLAPLPIGLAVFLVHLATIPITGTGINPARxxxxxxxxxxxxxxxxxxxxxxAGPLIGAAVATAYHKYLLRAGGFGLKNSESLRSHPTSAI*

Protein Length: 286

Fln nts: ATGGGGATAGTGGAGTAGCCATTAATTAAGCAGTATAGCTTCTGCTGTTAAGTTACGGAGAAGAGCAGG_-_ATGGCAGCGATGGGAGTAGAAGGCGGAGAACAAGAGAGCAGGGGTTATGAAGATCATGCTACCGCCCCTCTTTTGGATTCGCTAGAATTGAAGCGGTGGTCGTTCTACAGAGCCACCATGGCTGAATTTGTTGCTACGCTGCTTTTCCTCTACATAACACTCACAACCGTTGTTGAAAACAAACGAAGCAAAGGTACCTGCGGCGGAGTCGGGTTGTTGGGAGAAGCCTCCGCTTTCGGAGGAATGATCGCCGTTCTTGTATACTGCATATCGGCAATTTCAGGGGGTCACGTCAATCCAGCTGTCACGTTTGCACTGTTTCTTGCCCGCAAGGTCTCTCTTCCTCGCGCCCTAGCGTACATTGTAGCTCAATGCCTGGGTGCCCTGTGCGGAACTGCCCTGGTGAGGGGCATGCAGGGGAGTTTTTATGCCTCCACCGGAGGAGGATCGAACTCTGTTTCTACCGGTTATTCCAAGGGAACTGCCCTTCTCGCGGAGATCATTGGCACGTTCGTCTTGGTTTACACTGTCTTATCTGTTGCAGATCCCAAGCGCAAAGCCCACCACTCTCACATCCCTGTTTTGGCCCCACTTCCAATTGGGCTTGCGGTATTCTTGGTCCATTTAGCAACCATTCCCATCACAGGCACAGGCATCAACCCTGCCAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGGTCCGCTGATTGGAGCTGCGGTTGCTACGGCGTATCACAAGTATCTTCTAAGAGCGGGTGGTTTTGGTCTGAAAAACTCGGAATCGTTGCGTAGCCACCCCACCAGCGCAATATAG___AATGAAAAATTCACAGGCCATCTCTTATTATCCCACATTGCAGCAGTTTGATAAGTGGGCATTTATATTGTAAGGTCTCCACTGTGGAATTCTAGTAATAATAATAATATTGATAACTGCGTCCCTTTGTGTTGTTTAAAGCTTCATTATCGGAAGCTTTTTATTTCTATTAAATGTAATTCTTCGATCTCCATAAGTCATTTATTGTCAAATTATTTTCATACCATGAGCGTCCGGTTGCTCTTGTGTTGTTTAAAGGTTCAGTTTGTGGAGCCTCTGATAT

Fln Alignment:

AllPineV4_rep_c139950___EQESRGYEDHATAPLLDSLELKRWSFYRATMAEFVATLLFLYITLTTVVENKRSKGTCGGVGLLGEASAFGGMIAVLVYCISAISGGHVNPAVTFALFLARKVSLPRALAYIVAQCLGALCGTALVRGMQGSFYAXXXXXXXXXXXXXSKGTALLAEIIGTFVLVYTVLSVADPKRKAHHSHIPVLAPLPIGLAVFLVHLATIPITGTGINPARSFGPxxxxxxxxxxxxxxxxxWIFWAGPLIGAAVATAYHKYLLRAGGFGLKNSESLRSHPTSAI
A9NZ60_______________EMEGEDYEEHPPAPLLDSLELKLWSFYRAVIAEFVATLLFLYITMTTVVENKQSKGTCGGVGLLGEAWAFGGMIFVLVYCISGISGGHVNPAVTFALFLARKVSLPRAVLYVVAQCLGAVCGTALVKGIQGSFYASNGGGSNSVSPGYSKGSALLAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFLVYLATNSITGTGINPARSFGPxxxxxxxxxxxxxxxxxWIFWVGPLIGAAVATAYHRYLLRAGAFGSKNLGSLRSHPASAI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1160	66		33		0.997476

SSRs (tot: 1)

Start position	End position	Sequence	Length
175	188	TAT TAT TAT TAT TA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain