SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82177

Length: 1428 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82177

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD box RNA helicase [Pisum sativum] gb\|AAR97917.1\| DEAD box RNA helicase [Pisum sativum]	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	93%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSP8

Fln msg: Separated hits, possible frame ERROR between 1306 and 1308,

Fln protein: MAAADQAGNNFDAKSYDKNMQSVLGGEELYSTWEEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYSMPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPANLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRxxVGVDFVTKDDERMLQDIQRFYNVVIEELPSNVADLI*

Protein Length: 413

Fln nts: CGGAAATCTTCGCTTCAGCTTCCTTTTTAAGGTAACTCGGCCTCTCTCCGTTAATTCAGTCCCGGATAGATAGATTTCCTCGCTTCCTTTAAGGGCCTCTGTATTGTTTTTTTATCACGGAAATCTTCGCTTCAGCTTCCTTTTTAAGATCAAGGGTTTCTCAGCGAAAAGGTAAAACTAGGAA_-_ATGGCAGCTGCGGATCAGGCCGGAAACAACTTCGACGCCAAGAGCTATGACAAAAACATGCAGAGCGTCCTTGGAGGAGAAGAACTTTACTCTACCTGGGAGGAGGTTCATGAAACTTTTGACTCCATGGGGCTTCAGGAGAACCTTTTAAGAGGAATTTATGCATATGGTTTTGAGAAGCCATCTGCCATCCAGCAGAGAGGGATTGTGCCTTTCTGCCAAGGTCTTGATGTTATCCAGCAAGCACAATCAGGAACAGGAAAGACTGCAACTTTCTGTTCAGGAATTCTACAACAGTTGGACTACAGTATGCCTGAGTGTCAAGCTCTAGTTTTGGCCCCGACACGAGAACTAGCCCAGCAGATTGAGAAAGTTATGAGGGCACTTGGTGATTACCTTCAAGTAAGAGTACATGCATGTGTTGGTGGGACAAGCATCCGAGAGGACCTCCGTATTCTCCAAGCTGGTGTTCATGTTGTTGTGGGGACACCAGGTAGGGTCTATGATATGCTGCGGCGGCGTGCCTTGCGTCCAGACTCAATCAAAATGTTTGTGCTTGATGAAGCAGATGAAATGCTATCACGTGGATTTAAGGATCAGATATATGATATCTTTCAATTGCTACCTGCAAATCTCCAAGTTGGTGTTTTCTCTGCCACCATGCCTCCTGAGGCCTTGGAGATTACGAGGAAGTTCATGACTAATCCGGTCAGGATTCTTGTGAAAAGAGACGAGCTTACGCTGGAGGGTATCAAACAATTCTATGTTAATGTAGAGCGAGAGGATTGGAAGCTTGATACACTATGTGATCTGTATGAAACTTTGGCAATCACACAGAGTGTGATTTTCATCAATACCAGGAGGAAGGTAGATTGGCTGACAGATCAAATGCGAGCTCGGGATCACACAGTTTCTGCAACCCATGGTGACATGGATCAGAACACAAGAGACATCATTATGAGGGAATTCAGGTCTGGATCTTCTCGAGTCCTGATCACCACTGATCTATTGGCCCGAGGTATTGATGTACAACAAGTGTCTCTTGTTATCAACTATGACTTACCAACACAGCCTGAAAACTACCTTCACCGTATTGGTCGGAGTGGACGATTTGGCAGGAAxxxTGTTGGCGTGGACTTTGTTACCAAAGATGACGAGAGAATGCTGCAGGACATACAGAGATTCTATAACGTGGTAATTGAAGAATTGCCAAGTAATGTTGCTGATTTAATATAA___AGATAACATT

Fln Alignment:

AllPineV4_rep_c139927___MAAADQAGNNFDAKSYDKNMQSVLGGEELYSTWEEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYSMPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPANLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKxVGVDFVTKDDERMLQDIQRFYNVVIEELPSNVADLI
C0PSP8_______________MAGVDQAGNNFDAKSYDKNMQSVLGGEELYSTWEEVHETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLNYNVPECQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKxVAINFVTKDDERMLQDIQRFYNVVIEELPNNVADLI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
881	18		81		0.999994
944	90	10			0.90298
945	10	90			0.90298
1203	10	90			0.90298
1205	11	88			0.923564
1206			88	11	0.923564
1207	88			11	0.923564
1259		80		20	0.995493
1260	80			20	0.995493
1312	66		33		0.997456
1313		33	33	33	0.997751
1314	33		66		0.997459
1315		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain