SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82148

Length: 431 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82148
CGTCGTGACCTTGGCTGTCACTCAGCGGAAAAATAAGAGGGCTGCAATTCAGTGTCTGAAGAGGAAAAAATTGTATGAAACTCAAGTAGAGCAGCTTGGTAACTTCCAGCTACGAATACATGATCAGATGATTATGTTGGAAGGTGCAAAAGCAACAACAGAAACTGTAGACGCTCTCAGAACAGGAGCATTGGCAATGAAGACCATCCAAAAAGCAATGAATATAGAATGACATTGATAAACAATGGATGAGGTCAATGAACACACAGAGAATATGAAGCAGATCCAAGAGGCCTTGGCAACACCTATTGGTGCAGCTGCAGATTTTGATGAGGATGAACTGGAAGCTGAGCTGGAAGAATTGGAAGGAGCAGAGTTGGAGGAGCAACTTCTCCAGCCTGCAGTTACTGCCCCAGCAGCGCAATAACATT

Ace file of the UniGene sp_v2.0_unigene82148 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Charged multivesicular body protein 4b, putative n=4 Tax=rosids RepID=B9RKD5_RICCO	-	-	4.0e-39	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	vacuolar protein sorting-associated protein 32-2	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Snf7	IPR005024	-	-
Sma3	Seryl-tRNA synthetase, class IIa, N-terminal	IPR015866	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE50

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 36 aas, your sequence is shorter than subject: 142 - 223

Fln protein: VVTLAVTQRKNKRAAIQCLKRKKLYETQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGALAMKTIQKAMNIE*H**TMDEVNEHTENMKQIQEALATPIGAAADFDEDELEAELEELEGAELEEQLLQPAVTAPAAQ*

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGAAAAATAAGAGGGCTGCAATTCAGTGTCTGAAGAGGAAAAAATTGTATGAAACTCAAGTAGAGCAGCTTGGTAACTTCCAGCTACGAATACATGATCAGATGATTATGTTGGAAGGTGCAAAAGCAACAACAGAAACTGTAGACGCTCTCAGAACAGGAGCATTGGCAATGAAGACCATCCAAAAAGCAATGAATATAGAATGACATTGATAAACAATGGATGAGGTCAATGAACACACAGAGAATATGAAGCAGATCCAAGAGGCCTTGGCAACACCTATTGGTGCAGCTGCAGATTTTGATGAGGATGAACTGGAAGCTGAGCTGGAAGAATTGGAAGGAGCAGAGTTGGAGGAGCAACTTCTCCAGCCTGCAGTTACTGCCCCAGCAGCGCAATAACATT

Fln Alignment:

AllPineV4_rep_c139790___TQRKNKRAAIQCLKRKKLYETQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGALAMKTIQKAMNIE*H**TMDEVNEHTENMKQIQEALATPIGXXXXXXXXXXXXXXXXXXXXXXXXXXLQPAVTAPAAQ
D5AE50_______________TRRKNKRAAIQCLKRKKLYETQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGALAMKTIQKAMNIDDIDKTMDEVNEHTENMKQIQEALATPIGSAADIDEDELEAELEELEGAELEEQLLQPATTAPSSQ

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
197	66	33			0.997452
199		33		66	0.997452
200	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain