SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82033

Length: 1070 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82033

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative	-	-	6.0e-34	46%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	wd repeat-containing	-	-	2.75329e-40	61%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Separated hits, possible frame ERROR between 573 and 578, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 124 aas, your sequence is shorter than subject: 224 - 1131

Fln protein: G*HRTS*RQQLMLMIVRPSPSLKVPCWLSQRRTMA*RSYPTQLCWRVDPLKERGCHQRQWQQRVV*IDSGTHVKRRLLDEVTDRSKNWKLTEITDSGQCTSLRLPDRMHASKVVKLIDTNSSVVVVALTSNALHNLWKWPRSERNPSRKVERWGSLVAVVPPSRWKASIPTQMWQPASGIVTNNVVGDTNxxxSKNDSYVMSASSGKVSLFNMMTFTLREPFT*

Protein Length: 225

Fln nts: GGATAACACCGAACATCCTGACGACAACAATTGATGTTGATGATAGTTCGTCCGTCACCTTCGCTGAAGGTTCCCTGTTGGCTGTCACAACGAAGGACAATGGCATAAAGATCTTACCCAACGCAGCTATGCTGGAGAGTAGATCCTTTGAAGGAACGAGGGTGCCATCAGAGACAATGGCAACAAAGAGTAGTATAGATAGACAGTGGGACCCATGTTAAACGAAGGCTTCTAGATGAGGTCACAGACAGGAGCAAGAACTGGAAATTGACTGAGATCACTGATTCGGGTCAGTGTACGTCTCTCAGGTTACCTGATAGAATGCATGCTAGCAAGGTGGTAAAACTGATAGACACCAATTCCAGTGTTGTTGTCGTAGCACTGACATCCAATGCTCTCCATAACCTATGGAAATGGCCACGGAGTGAGCGAAATCCATCCAGAAAGGTGGAAAGGTGGGGTTCTTTAGTAGCTGTTGTTCCACCTTCAAGGTGGAAAGCGAGCATTCCAACACAGATGTGGCAGCCAGCTAGTGGGATTGTTACGAATAATGTCGTTGGTGATACAAATCCxxxxxxGTCTAAGAATGATTCCTATGTAATGTCTGCTTCCAGTGGCAAGGTCTCCTTATTCAATATGATGACATTTACGCTAAGAGAGCCTTTTACCTAAAGACCAGTTTCATTTTAATGTTTCCGATGTATATATAATTTCAGTTTTGTACCTCAGTTTTGGTACATTGGTCTGCTAGGGTTTAGTCTCTAATGTCTCACCTTCAACTTTCAGTTTATGTGGGTAATGAGGTTTAGTTACTCTAGAAGGTTCTTGTGTAATGTTCCTTATCTAATTCAAAGGCTCCCAGTTTATCCAAATCACTGGTTTCATAGTGATTCATTGCCAGGTCGCCACCTTCTCAGGCAGCGACTTTTCTGGCTTTCCACCTTCTTAGGCAGCCACTTTACTGGATTTCCACCTTCAGGACAAGGCACGGAGAATTCATCAATTCAAATATACAACCACATCTTTTGGCAGTTATGTTCCTGGGGCATAAATGGGTGGGACAAGCGAAAGT

Fln Alignment:

AllPineV4_rep_c139343___VKRRLLDEVTDRSKNWKLTEITDSGQCTSLRLPDRMHASKVVKLIDTNSSVVVVALTSNALHNLWKWPRSERNPSRKVERWGSLVAVVPPSRWKASIPTQMWQPASGIVTNNVVGDTNPxxSKNDSYVMSASSGKVSLFNMMTFTLREPF
Q94AI7_______________VKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKA---------------TASLPPQQWQPASGILMTNDVAETNPxxSKNDSYVMSASGGKISLFNMMTFKTMATF

SNPs (tot: 5)

Position	A %	C %	T %	Probability
635	75		25	0.996474
641	75		25	0.996476
674	33	66		0.997452
884		25	75	0.996473
920		60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain