SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81891

Length: 446 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene81891
CGGCTTCAGCAGAATGCCTTCGAACAGCACGTTGTTCTCTGCTGAAGCCGAGCATGGTTACCCCTGGTGCCGAGTGTAAGGAGAGGGCCAGTCCCGAAACTGTTGCCCAATATACCCTGAACCTTCTCCGAAGAAGAGTTCCACCGGCCGTTCCTGGAATCATGTTCTTGTCTGGTGGCAATCTGAGGTGGAGGCGACCTTGAACTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAAACACTTGCACAGCTTGGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAAGCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTTGAAAGGCATAGCTACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGGTTG

Ace file of the UniGene sp_v2.0_unigene81891

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI	-	-	7.0e-35	97%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	1.36024e-34	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC9

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 179 and 179, query STOP codon too far from subject stop. Distance to subject end: 46 aas, putative chimeric sequence, your sequence is shorter than subject: 101 - 398

Fln protein: ASAECLRTARCSLLKPSMVTPGAECKERASPETVAQYTLNLLRRRVPPAVPGIMFLSGxxSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCTAWQILC*

Protein Length: 102

Fln nts: CGGCTTCAGCAGAATGCCTTCGAACAGCACGTTGTTCTCTGCTGAAGCCGAGCATGGTTACCCCTGGTGCCGAGTGTAAGGAGAGGGCCAGTCCCGAAACTGTTGCCCAATATACCCTGAACCTTCTCCGAAGAAGAGTTCCACCGGCCGTTCCTGGAATCATGTTCTTGTCTGGTxxxxxxTCTGAGGTGGAGGCGACCTTGAACTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAAACACTTGCACAGCTTGGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAAGCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTTGAAAGGCATAGCTACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGGTTG

Fln Alignment:

AllPineV4_rep_c138740___LLKPSMVTPGAECKERASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTC
A9NUC9_______________LLKPSMVTPGAECKDRASPETVAQYTLNLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain