SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81875

Length: 690 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene81875 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EF-hand, calcium binding motif-containing protein [Arabidopsis thaliana] dbj\|BAB10007.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24286.1\| Unknown protein [Arabidopsis thaliana] gb\|AAN15353.1\| Unknown protein [Arabidopsis thaliana] gb\|AED91325	-	-	2.0e-24	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	68%
Blast2go	protein	-	-	6.42736e-32	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.42736e-32	78%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
479		80		20	0.995493
480		80	20		0.995493
481	20	80			0.995493
482	80		20		0.995493
484		80	20		0.995493
485	20			80	0.995493
486		20		80	0.995493
487	20			80	0.995493
489		20		80	0.995493
492	20		80		0.995493
493		80	20		0.995493
494	80		20		0.995493
500	20	80			0.995493
596	75	25			0.996473
651			33	66	0.997453
652	33	66			0.997453
657		33	66		0.997454
659		66	33		0.997452
660		33		66	0.997452
663	33			66	0.997453
664	66		33		0.997453
671	33			66	0.997453
672	33	33	33		0.99775

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain