SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81836

Length: 275 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81836
CGTCGTGACCTTGGCTGTCACTCAACTATTAAAGATAAGTTGCCCATTCCTGTCATTGATGAATTACTGGATGAATTGCATGGAGCAATTTACTTCACCAAGTTGGATCTTTGTTCGAGATATCATCAAATCAGAATGAAGATTGAAGACATTCCGAAAACAACATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGCCTTACCAATGCACCTTCAACATTTCAAGGTTTCATGAATTCAATTTTCAAACCATTCCTTAG

Ace file of the UniGene sp_v2.0_unigene81836

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE	-	-	3.0e-33	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	reverse transcriptase	-	-	8.54792e-44	85%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	FMRFamide-related peptide-like	IPR002544	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: STOP codon was not found. Distance to subject end: 46 aas,

Fln protein: RRDLGCHSTIKDKLPIPVIDELLDELHGAIYFTKLDLCSRYHQIRMKIEDIPKTTFRTHEGHYEFLVMPFGLTNAPSTFQGFMNSIFKPFL

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTATTAAAGATAAGTTGCCCATTCCTGTCATTGATGAATTACTGGATGAATTGCATGGAGCAATTTACTTCACCAAGTTGGATCTTTGTTCGAGATATCATCAAATCAGAATGAAGATTGAAGACATTCCGAAAACAACATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGCCTTACCAATGCACCTTCAACATTTCAAGGTTTCATGAATTCAATTTTCAAACCATTCCTTAG

Fln Alignment:

AllPineV4_rep_c138491___TIKDKLPIPVIDELLDELHGAIYFTKLDLCSRYHQIRM
A9NWN2_______________TIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHIRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain