SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81746

Length: 1183 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene81746

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plasma membrane intrinsic protein n=2 Tax=Poaceae RepID=A7J2I0_WHEAT	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	plasma membrane intrinsic protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9R4

Fln msg: Separated hits, possible frame ERROR between 204 and 243, and possible frame ERROR between 578 and 882, STOP codon was not found. Distance to subject end: 13 aas, your sequence is longer than subject: 394 - 272

Fln protein: YLWSFYRAIIAESVATLLFLYVTIATVIGNANDKSPCGGVGTLGIAWSFGGMIFVLVYCTAGISGGNxxxxxxxxxxxxxxLIFDLTKPYNVVAGGHLNPAVTLGLFVARKVTLNRAVLYMVAQCLGAICGAGMVKALQKTYYSSGGGGANSVSKGYGNETALTAEIVGTFVLVYTVFYATDIKSNARDAHVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALAPLSIGFAVFMVHLATIPVTGTGINPARSFGAAVIYGHKKSWDDHVR*R*LSPFYCFLFISIAVFMELNFDCYIAVDLLGWSSYWRYGSCCVHKYVIR

Protein Length: 395

Fln nts: TATCTCTGGTCGTTCTACAGAGCCATCATAGCCGAGTCCGTGGCCACGCTTTTGTTTCTATATGTGACAATTGCCACCGTCATCGGGAATGCTAACGATAAGAGTCCGTGTGGAGGCGTGGGTACCCTGGGCATCGCCTGGTCCTTCGGCGGAATGATCTTTGTCCTCGTGTATTGCACCGCTGGAATTTCAGGTGGTAATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGATATTTGATTTGACAAAACCATATAATGTTGTTGCAGGTGGGCATCTAAACCCCGCGGTCACGTTGGGGCTGTTTGTTGCTCGGAAAGTGACTCTGAATCGAGCAGTCTTGTACATGGTGGCACAGTGTTTGGGCGCAATCTGCGGGGCAGGGATGGTGAAAGCGTTGCAGAAAACTTACTATTCTAGTGGCGGGGGAGGAGCGAACTCAGTGTCGAAGGGATACGGCAATGAAACAGCTCTCACCGCAGAGATAGTTGGCACTTTCGTCTTGGTGTATACCGTCTTCTATGCCACCGACATCAAGAGCAACGCCCGCGACGCTCACGTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCTTTGGCTCCGCTTTCAATTGGATTTGCTGTATTCATGGTACACTTGGCAACCATTCCCGTCACTGGAACGGGCATCAATCCTGCCAGAAGCTTTGGAGCAGCTGTGATTTATGGCCATAAGAAATCCTGGGACGACCATGTAAGATGAAGATAATTGTCTCCTTTCTATTGTTTTCTATTCATCAGTATTGCAGTTTTTATGGAATTAAATTTTGATTGTTACATTGCAGTGGATCTTCTGGGTTGGTCCTCTTATTGGCGCTACGGTAGCTGCTGCGTTCACAAATACGTTATCCGAGC

Fln Alignment:

AllPineV4_rep_c138143___YLWSFYRAIIAESVATLLFLYVTIATVIGNANDKSPCGGVGTLGIAWSFGGMIFVLVYCTAGISGGNLxxxxxxxxxxxxxLIFDLTKPYNVVAGGHLNPAVTLGLFVARKVTLNRAVLYMVAQCLGAICGAGMVKALQKTYYSSGGGGANSVSKGYGNETALTAEIVGTFVLVYTVFYATDIKSNARDAHVPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALAPLSIGFAVFMVHLATIPVTGTGINPARSFGAAVIYGHKKSWDDH
D5A9R4_______________YLWSFYRAIIAEFVATLLFLYVTIATVIGNANQKKPCGGVGTLGIAWSFGGMIFVLVYCTAGVSGGHIxxxxxxxxxxxxxMIFVLVYCTAGVSGGHINPAVTFGLFVARKMTLNRAVFYIVAQCLGAVCGAGMVKALQKNYYSAGGGGANTVKEGYASETALAAEIAGTFVLVYTVFCATDPKSNARDSHVPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALAPLSVGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKKSWNDH

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
481		75		25	0.996473
835	66		33		0.997461
959	33	66			0.997461
963		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain