SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81662

Length: 374 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene81662
AATGTTATACCCTGAACCTTCTCCGAAGAAGAGTTCCACCGGCCGTTCCTGGAATCATGTTCTTGTCTGGTGGGCAATCTAGAGGTGGAGGCGACCTTGAATTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAAGCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGTTACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGCCACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGG

Ace file of the UniGene sp_v2.0_unigene81662

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fructose-bisphosphate aldolase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RX76_PHYPA	-	-	2.0e-18	90%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	fructose bisphosphate aldolase	-	-	5.44359e-18	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	5.44359e-18	85%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	5.44359e-18	85%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	5.44359e-18	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	5.44359e-18	85%
Blast2go	plastoglobule	GO:0010287	Cellular Component	5.44359e-18	85%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	5.44359e-18	85%
Blast2go	apoplast	GO:0048046	Cellular Component	5.44359e-18	85%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVA7

Fln msg: Overlapping hits, possible frame ERROR between 80 and 73, query STOP codon too far from subject stop. Distance to subject end: 52 aas, putative chimeric sequence, your sequence is shorter than subject: 60 - 393

Fln protein: CYTLNLLRRRVPPAVPGIMFLSGxxxxEVEATLNLNAMNQAPNPWHVSFSYARALQILC*

Protein Length: 61

Fln nts: AATGTTATACCCTGAACCTTCTCCGAAGAAGAGTTCCACCGGCCGTTCCTGGAATCATGTTCTTGTCTGGTxxxxxxxxxxxxGAGGTGGAGGCGACCTTGAATTTGAACGCGATGAACCAGGCGCCGAACCCGTGGCACGTATCATTCTCATATGCTCGTGCTCTGCAAATACTCTGCTGAAGGCGAGTCTGCGGAGTCGAAGGAGGGAATGTTCGTGAAGGGCTACACTTATTAAGCATACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGTTACTAGTCCAGTGCAGTGGAGTCTAGTATAGTATGGTTGAAAAGCATAGCCACTAGTCCAGTGCGGTGGAGTCTAGTATAGTATGG

Fln Alignment:

AllPineV4_rep_c137731___YTLNLLRRRVPPAVPGIMFLSGxxxEVEATLNLNAMNQAPNPWHVSFSYARALQ
A9NVA7_______________YTLKMLKRRVPPAVPGIMFLSGxxxEVEATLNLNAMNQSPNPWHVSFSYARALQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain