SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81619

Length: 553 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene81619
ACAGCGTCTCCAGTTGTGGGTGTCAAATCAGATCCCAAGATATGGTATCCTCTCGCCAAGACTTTAGCAGAAAAGCAGCATGGGATTTTGCGGAAGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGGCCAAGTCTTCCTCCTAGCCTGTGCTCAACTGCATCTGATGTCCTTGGTTTGTTAAAAGGAGAAACGCAGAAATTTACTCTGCACGGACGAATGGGATACGTTCACATTGACGACGTTGCTGGTTGTCACATTCTGGTATATGAGGAACCCCCTGCCAAAGGACGTTACATATGCTCCTCTGCTGTGCTCGAAAACTGTGACCTGGGAGCCATGTTAGCAGACTGTTATCCACATCTCAACGTTCCCACACAGTTTTAATTATTGTGGGCATCCAGATTCGAGAACGTTTGGGGAGACAGAGCTTACTACAATTACAACACCTCCAAGTTGAGAGCTCTAGGTTTCGAATTCAAGAGCATACAAGAGATGTTCCAGGATTGTATTGAATCGCTTAAAGAGCAGGGCCACAT

Ace file of the UniGene sp_v2.0_unigene81619 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9SC77_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE0

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 183 - 351

Fln protein: SVSSCGCQIRSQDMVSSRQDFSRKAAWDFAEENNLDMVAVLPTFVIGPSLPPSLCSTASDVLGLLKGETQKFTLHGRMGYVHIDDVAGCHILVYEEPPAKGRYICSSAVLENCDLGAMLADCYPHLNVPTQF*LLWASRFENVWGDRAYYNYNTSKLRALGFEFKSIQEMFQDCIESLKEQGH

Protein Length: 184

Fln nts: ACAGCGTCTCCAGTTGTGGGTGTCAAATCAGATCCCAAGATATGGTATCCTCTCGCCAAGACTTTAGCAGAAAAGCAGCATGGGATTTTGCGGAAGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGGCCAAGTCTTCCTCCTAGCCTGTGCTCAACTGCATCTGATGTCCTTGGTTTGTTAAAAGGAGAAACGCAGAAATTTACTCTGCACGGACGAATGGGATACGTTCACATTGACGACGTTGCTGGTTGTCACATTCTGGTATATGAGGAACCCCCTGCCAAAGGACGTTACATATGCTCCTCTGCTGTGCTCGAAAACTGTGACCTGGGAGCCATGTTAGCAGACTGTTATCCACATCTCAACGTTCCCACACAGTTTTAATTATTGTGGGCATCCAGATTCGAGAACGTTTGGGGAGACAGAGCTTACTACAATTACAACACCTCCAAGTTGAGAGCTCTAGGTTTCGAATTCAAGAGCATACAAGAGATGTTCCAGGATTGTATTGAATCGCTTAAAGAGCAGGGCCACAT

Fln Alignment:

AllPineV4_rep_c137557___SRKAAWDFAEENNLDMVAVLPTFVIGPSLPPSLCSTASDVLGLLKGETQKFTLHGRMGYVHIDDVAGCHILVYEEPPAKGRYICSSAVLENCDLGAMLADCYPHLNVPTQF*LLWASRFENVWGDRAYYNYNTSKLRALGFEFK-SIQEMFQDCIESLKEQG
C0PQE0_______________AEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPT--------KFKDADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain