SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81599

Length: 320 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81599
AGTTTGACAACGCTCAGAAGGGTGAGCCCTTTATTCCATGGAGCTGGCCTTGTCTTTGGAGAAACTCACAAATCAAAAGCTTCTGAACTTGCACTGTAGCCCAAGAGGCTAACGATGGTCAGATGACAGATTTCATCGAGGGCAACTTTCTGGCCCACCAGGTTGAAGCTATCAAGAAAGTATCAGAATATGTGTCTCAGTTGAGAAGGATAGGCAAAGGCCACGCTGTATGGCATTTTGATCAGATGCTCCAAAATGGAGGTGATGTAGCTGCTGCCCCAGACGCAGGAGCTCTGGCTGCTGCTTGAGTTGATTGAGAA

Ace file of the UniGene sp_v2.0_unigene81599

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferritin (Fragment) n=3 Tax=Pseudotsuga RepID=C6F952_PSEMZ	-	-	2.0e-26	94%
FL-Next	sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	ferritin	-	-	3.47117e-28	87%

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ferritin	IPR001519	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Ferritin/DPS protein domain	IPR008331	-	-
Sma3	Ferritin- like diiron domain	IPR009040	-	-
Sma3	Ferritin-related	IPR012347	-	-
Sma3	Ferritin, conserved site	IPR014034	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI0

Fln msg: your sequence is shorter than subject: 102 - 289

Fln protein: FDNAQKGEPFIPWSWPCLWRNSQIKSF*TCTVAQEANDGQMTDFIEGNFLAHQVEAIKKVSEYVSQLRRIGKGHAVWHFDQMLQNGGDVAAAPDAGALAAA*

Protein Length: 103

Fln nts: AGTTTGACAACGCTCAGAAGGGTGAGCCCTTTATTCCATGGAGCTGGCCTTGTCTTTGGAGAAACTCACAAATCAAAAGCTTCTGAACTTGCACTGTAGCCCAAGAGGCTAACGATGGTCAGATGACAGATTTCATCGAGGGCAACTTTCTGGCCCACCAGGTTGAAGCTATCAAGAAAGTATCAGAATATGTGTCTCAGTTGAGAAGGATAGGCAAAGGCCACGCTGTATGGCATTTTGATCAGATGCTCCAAAATGGAGGTGATGTAGCTGCTGCCCCAGACGCAGGAGCTCTGGCTGCTGCTTGA___GTTGATTGAGAA

Fln Alignment:

AllPineV4_rep_c137435___FDNAQKGEPFIPWSWPC-LWRNSQIKSF*TCTVAQEANDGQMTDFIEGNFLAHQVEAIKKVSEYVSQLRRIGKGHAVWHFDQMLQN
C0PRI0_______________FDNSQKGEALYAMELALSLEKLTNQKLLNLHTVAQEANDGQMTDFIEGNFLTDQVQAIKKVSEYASQLRRIGQGHGVWHFDQMLLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain