SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81485

Length: 794 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene81485

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	plasma membrane protein 3 [Leymus chinensis]	-	-	5.0e-20	84%
FL-Next	tr=Low temprature induced-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	low temprature induced-like protein	-	-	5.316e-30	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteolipid membrane potential modulator	IPR000612	-	0.0	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
268	10		90		0.90298
269	10	90			0.90298
272			10	90	0.90298
335	25	75			1.0
344		25	75		1.0
402		37		62	1.0
405	50	12	37		1.0
406		87		12	0.992554
407	87			12	0.992554
408	83		16		0.994512
409		80	20		0.995493
411	80			20	0.995493
412	80		20		0.995493
413		80		20	0.995493
417	80	20			0.995493
419		20		80	0.995493
420	20			80	0.995493
421		16	83		0.994514
425	83			16	0.994512
441	16	83			0.994514
451		75	25		0.996473
458			20	80	0.995493
460			20	80	0.995493
461	20			80	0.995493
465	80	20			0.995493
505		80		20	0.995494
538		87		12	0.992554
575		14		85	0.993533
582	20			80	0.995496
597	25		75		0.996474
598		25	75		0.996478
617		66		33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
31	50	CTGAAT CTGAAT CTGAAT CT	20
47	66	ATCTTC ATCTTC ATCTTC AT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain