SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81433

Length: 304 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81433
CGTCGTGACCTTGGCTGTCACTCAAGTTGGAACAGTAATTGTCGTCCCTTTCTGTCTCTCATTTTTCGCACCACGTTCAGGATTGACAAAAAGATCAATGGAAAGCAATATTCCATATATTGTACTTGGAGCTCTGTATGCGTATTTGCTGTTTCTCTCATGGACACCAGAAACTTTGCGCTTGATGTTTGCAAGCAAGTACTGGCTCCCAGAGTTACCTGGCATTACTAGGATGTTCGCAAGTGACCTGACATAGCTCTGCCTGGCTACACCTCTTGACTGTTGACCTGTTTGCTGCAAGGCA

Ace file of the UniGene sp_v2.0_unigene81433

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	abscisic acid (aba)-deficient 4 protein [Arabidopsis thaliana] gb\|AAM61291.1\| unknown [Arabidopsis thaliana] dbj\|BAD43317.1\| unknown protein [Arabidopsis thaliana] gb\|ABD43002.1\| At1g67080 [Arabidopsis thaliana] gb\|AEE34593.1\| abscisic acid (aba)-deficien	-	-	4.0e-24	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	abscisic acid -deficient 4 protein	-	-	2.68315e-39	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	photoprotection	GO:0010117	Biological Process	2.68315e-39	81%
Blast2go	regulation of superoxide anion generation	GO:0032928	Biological Process	2.68315e-39	81%
Blast2go	xanthophyll metabolic process	GO:0016122	Biological Process	2.68315e-39	81%
Blast2go	abscisic acid biosynthetic process	GO:0009688	Biological Process	2.68315e-39	81%
Blast2go	PSII associated light-harvesting complex II	GO:0009517	Cellular Component	2.68315e-39	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	2.68315e-39	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWL4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 60 aas, your sequence is shorter than subject: 85 - 241

Fln protein: VVTLAVTQVGTVIVVPFCLSFFAPRSGLTKRSMESNIPYIVLGALYAYLLFLSWTPETLRLMFASKYWLPELPGITRMFASDLT*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTGGAACAGTAATTGTCGTCCCTTTCTGTCTCTCATTTTTCGCACCACGTTCAGGATTGACAAAAAGATCAATGGAAAGCAATATTCCATATATTGTACTTGGAGCTCTGTATGCGTATTTGCTGTTTCTCTCATGGACACCAGAAACTTTGCGCTTGATGTTTGCAAGCAAGTACTGGCTCCCAGAGTTACCTGGCATTACTAGGATGTTCGCAAGTGACCTGACATAGCTCTGCCTGGCTACACCTCTTGACTGTTGACCTGTTTGCTGCAAGGCA

Fln Alignment:

AllPineV4_rep_c136762___VTLAVTQVGTVIVVPF-CLSFFAPRSGLTKRSMESNIPYIVLGALYAYLLFLSWTPETLRLMFASKYWLPELPGITRMFASDLT
A9NWL4_______________IASSIFTAGTIIVIPFYTLMVFAPHSGLTKRSIESNIPYIVLGALYAYLLFLSWTPETLRLMFASKYWLPELPGITRMFSSDLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain