SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81382

Length: 1057 nt

Origin of reads: Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene81382

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phytoalexin-deficient 4-2 protein [Solanum tuberosum]	-	-	2.0e-33	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	uncharacterized protein loc100788725	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW04

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 29 aas, your sequence is shorter than subject: 352 - 616

Fln protein: NHWNFGLNIHA*RSPHLTARLA*TCRQRDLSTIAVEHLHHSCRAAPFLRWNNIAV**ITCLYCEYCASNAGLLSFLHASFLSCKI*YKIFTVALYLSALLLLNFIFKHTN*SLKCC*IGDDYFVQNDHAQLGLQKAGETENKYNTHVDRLAIELSVRQRTMAELEWYKEICEKEGGIGYYDTFKNQDMKDISADTRKVKLAEFWDEIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIAYYYRNNINGNYLSDGRHNRHKVLQKWMEAKEKARGSRGQRPRTKRASLTPDSCLWAHVEEAWKDLKNLKQGQHESLQKLEKFEEYVTKMENDLSISRDVFFQGSRFKMW

Protein Length: 353

Fln nts: AAATCACTGGAACTTTGGCCTAAACATACACGCATAGAGATCTCCCCACCTCACTGCAAGGTTGGCCTAAACATGCAGACAGAGGGATCTCTCCACCATAGCTGTAGAGCATCTCCACCATAGCTGTAGAGCAGCTCCCTTCTTGAGATGGAACAACATTGCAGTCTAATGAATTACCTGTCTTTACTGTGAATACTGTGCTTCCAATGCTGGCCTTCTGAGTTTTCTGCATGCTAGTTTTTTATCGTGTAAGATCTGATATAAGATTTTTACTGTAGCGTTGTATTTATCTGCTCTCCTACTCTTGAATTTTATTTTCAAGCACACTAATTGATCTTTGAAATGTTGTTGAATTGGTGATGATTACTTTGTGCAGAATGATCATGCACAGCTTGGCCTACAGAAAGCTGGAGAAACTGAGAACAAGTATAACACACATGTTGATAGGCTAGCTATTGAGTTAAGCGTAAGACAAAGAACTATGGCAGAGCTTGAATGGTATAAAGAGATTTGTGAGAAGGAGGGTGGCATCGGgTATTATGATACCTTCAAGAACCAAGACATGAAGGATATTAGTGCTGATACGCGTAaGGTAAAGCTTGCAGAGTTTTGGGATGAGATTATTGAAAAGTGGGAAGGTCATGAGTTGCCAAGTGATTTCGAATCCCAAAATAAGTGGATAAATGCTGGCAATACTTATAGAAAACTGGTAGAGCCTCTGGATATAGCATATTATTATCGCAATAACATCAATGGCAACTATCTTTCAGATGGAAGACACAATCGCCATAAAGTTCTTCAGAAATGGATGGAAGCGAAAGAAAAAGCTCGCGGTTCAAGAGGTCAACGACCCCGCACAAAGCGTGCATCCCTCACCCCGGACTCGTGCCTTTGGGCACATGTAGAAGAGGCTTGGAAAGACCTGAAAAATCTAAAACAAGGACAACACGAAAGCCTACAAAAGCTTGAAAAGTTTGAAGAGTATGTAACAAAGATGGAAAACGATCTCAGCATTTCTCGAGATGTTTTCTTCCAGGGAAGCAGGTTCAAGATGTGG

Fln Alignment:

AllPineV4_rep_c136529___QNDHAQLGLQKAGETENKYNTHVDRLAIELSVRQRTMAELEWYKEICEKEGGIGYYDTFKNQD-MKDISADTRKVKLAEFWDEIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIAYYYRNNINGNYLSDGRHNRHKVLQKWMEAKEKARGSRGQRPRTKRASLTPDSCLWAHVEEAWKDLKNLKQGQHESLQKLEKFEEYVTKMENDLSISRDVFFQGSRFKMW
A9NW04_______________QNDHAQFALRRAGETEDNYNTNVDKLAIELSLKQSSMAELEWYKERCEKEDGITYYDSFKKQNNRKDFRANVDRKKLCQFWDEIIEKWEGHELPSDFESQNKWINAGNTYRRLVEPLDIASYYRTNGNGNYLSDGRPNRHKILQRWMEAKEKTRSSRGQRPRTKRASLTADSCFWAHVEEAWKDLENLKQGQHQSLQKLEKFEEDVTNMENALTISPDVFLEGSSFIMW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
457		33		66	0.997452
496	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain