SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81377

Length: 510 nt

Origin of reads: Inia v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene81377
GTGTTAAATGGCAGGGCCATGATTTATTACAAACAACTTTCTATTTTATACGCAGACCTTGCCATTTAACACCTAATACAATCTATCCAACATACCTAGCCGGTCTCTATCACATATACTATTACTCATTTGCAATTGCAAGGGTCGCAGGTACAGTTGGATCCACACTTGCAACCGCCAGAAGCGCAGCACCCACTCTCTCCCGAGACAGTAGCAGAACCCTCAAAATATCCCATGTCAGAAGCCGTGGCTGCAAATAGGGGCGCCACTATTCCAGTTGGAACGGAGTGAAGATGCACGCTAACCGTTTTCTCGTTTCTCAAGTTCTAAAGAAGCAACTTGGCTTCAAGGGCTTTGTTATTTCAGATTGGCAAGGTATCGACAGAATAACTAGCCCGGCTGGTGCTAATTACTCTTTGTCAGTCTTTGACGGTGTCAGTGCAGGGATTGACATGGTGATGGTTCCCTACAATTTCATGGACTTTATTGGCGATCTGACTTCGCAAGTCA

Ace file of the UniGene sp_v2.0_unigene81377

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI	-	-	5.0e-34	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	glycosyl hydrolase-like protein	-	-	9.73097e-40	85%

Source	InterPros	Term	Type	Identity
Sma3	Metallothionein, family 15, plant	IPR000347	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 274 aas, your sequence is shorter than subject: 169 - 631

Fln protein: VKWQGHDLLQTTFYFIRRPCHLTPNTIYPTYLAGLYHIYYYSFAIARVAGTVGSTLATARSAAPTLSRDSSRTLKISHVRSRGCK*GRHYSSWNGVKMHANRFLVSQVLKKQLGFKGFVISDWQGIDRITSPAGANYSLSVFDGVSAGIDMVMVPYNFMDFIGDLTSQV

Protein Length: 170

Fln nts: GTGTTAAATGGCAGGGCCATGATTTATTACAAACAACTTTCTATTTTATACGCAGACCTTGCCATTTAACACCTAATACAATCTATCCAACATACCTAGCCGGTCTCTATCACATATACTATTACTCATTTGCAATTGCAAGGGTCGCAGGTACAGTTGGATCCACACTTGCAACCGCCAGAAGCGCAGCACCCACTCTCTCCCGAGACAGTAGCAGAACCCTCAAAATATCCCATGTCAGAAGCCGTGGCTGCAAATAGGGGCGCCACTATTCCAGTTGGAACGGAGTGAAGATGCACGCTAACCGTTTTCTCGTTTCTCAAGTTCTAAAGAAGCAACTTGGCTTCAAGGGCTTTGTTATTTCAGATTGGCAAGGTATCGACAGAATAACTAGCCCGGCTGGTGCTAATTACTCTTTGTCAGTCTTTGACGGTGTCAGTGCAGGGATTGACATGGTGATGGTTCCCTACAATTTCATGGACTTTATTGGCGATCTGACTTCGCAAGTCA

Fln Alignment:

AllPineV4_rep_c136512___YSSWNGVKMHANRFLVSQVLKKQLGFKGFVISDWQGIDRITSPAGANYSLSVFDGVSAGIDMVMVPYNFMDFIGDLTSQV
A9NUD1_______________YSSWNGMKMHANRFLVSEVLKKQLGFKGFVISDWQGIDRITSPPGANYSLSVFDGVGAGIDMVMVPENFTNFITELTSQV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
243	66		33		0.997457

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain