SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81339

Length: 765 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene81339 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL	-	-	5.0e-20	96%
FL-Next	tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	96%
Blast2go	protein	-	-	2.64476e-24	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA duplex unwinding	GO:0032508	Biological Process	2.64476e-24	84%
Blast2go	seed development	GO:0048316	Biological Process	2.64476e-24	84%
Blast2go	seed germination	GO:0009845	Biological Process	2.64476e-24	84%
Blast2go	response to cold	GO:0009409	Biological Process	2.64476e-24	84%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	2.64476e-24	84%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	2.64476e-24	84%
Blast2go	stamen development	GO:0048443	Biological Process	2.64476e-24	84%
Blast2go	copper ion binding	GO:0005507	Molecular Function	2.64476e-24	84%
Blast2go	mRNA binding	GO:0003729	Molecular Function	2.64476e-24	84%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	2.64476e-24	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	2.64476e-24	84%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	2.64476e-24	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.64476e-24	84%
Blast2go	nucleolus	GO:0005730	Cellular Component	2.64476e-24	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.64476e-24	84%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cold-shock protein, DNA-binding	IPR002059	-	-
Sma3	Cold shock protein	IPR011129	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR013084	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
433		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain