SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81286

Length: 502 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene81286
AATGTTTATAACCAGGGAATTCAGTGAAGTTATTGGGACCTTACAAGCCTGCCCACTACCGATACTGAAGAGAAATGGCATTTTTGGAGTTTGCCAAGACCGGGAAGGTGCCAGATCCGGCGTCTACTACGAATCTGGAGTTTCAGATGGTTTTGGGATTGATCAAGGACAGCATCAAGGTGGATCCCTTGAGGTACCATAAGATGAAGGATAGATTGGTTGGTGTTCTGAAGAGACAACTACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGGACATTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACCAAGAGCAAGTTTGATAACTTATATGGATGTTCAGAGTTAGGTCTAGATTTGAGATTTTAAGTCAGCAGAGCTGAACCAGAGGAAGATTTGGAATGTCTCATTTGTTACTATTATATCTAGACTGATGTTTTCATTCAAGTCTAAGCATGTTTTGTTTCAGACTTCAGTACGTCGTACTAC

Ace file of the UniGene sp_v2.0_unigene81286

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Adenosylhomocysteinase n=6 Tax=Tracheophyta RepID=A9NUB8_PICSI	-	-	4.0e-35	85%
FL-Next	sp=Adenosylhomocysteinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	s-adenosyl-l-homocysteine hydrolase	-	-	9.67973e-39	98%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	IPR015878	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNU2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 227 and 227, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 191 aas, your sequence is shorter than subject: 127 - 485

Fln protein: CL*PGNSVKLLGPYKPAHYRY*REMAFLEFAKTGKVPDPASTTNLEFQMVLGLIKDSIKVDPLRYHKMKDRLVGxxEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCSELGLDLRF*

Protein Length: 128

Fln nts: AATGTTTATAACCAGGGAATTCAGTGAAGTTATTGGGACCTTACAAGCCTGCCCACTACCGATACTGAAGAGAAATGGCATTTTTGGAGTTTGCCAAGACCGGGAAGGTGCCAGATCCGGCGTCTACTACGAATCTGGAGTTTCAGATGGTTTTGGGATTGATCAAGGACAGCATCAAGGTGGATCCCTTGAGGTACCATAAGATGAAGGATAGATTGGTTGGTxxxxxxGAAGAGACAACTACTGGTGTTAAGAGGCTTTATCAGATGCAAGCCAGTGGGACATTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACCAAGAGCAAGTTTGATAACTTATATGGATGTTCAGAGTTAGGTCTAGATTTGAGATTTTAAGTCAGCAGAGCTGAACCAGAGGAAGATTTGGAATGTCTCATTTGTTACTATTATATCTAGACTGATGTTTTCATTCAAGTCTAAGCATGTTTTGTTTCAGACTTCAGTACGTCGTACTAC

Fln Alignment:

AllPineV4_rep_c136041___EFAKTGKVPDPASTTNLEFQMVLGLIKDSIKVDPLRYHKMKDRLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGC
B8LNU2_______________EFAKTGKVPDPESTTNLEFQMVLGLIKESMKVDPLRYHRMKERLVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain