SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81274

Length: 391 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81274
AACAAAATAGGTGATACGGTACTGCATATTAGAACTCCGGCAATGGGCTGATGCTATGGTGATTGCTCCACTCTCAGCAAACACGCTTGCTAAGCTCTTGATCTTGGCTGTCAGTTGGCCTATGCGACAATCTACTTACTTGCATAGTACGTGCATGGGACTTTAACAAGCCTCTCTTTGTAGCTCCTGCAATGAATACTTTCATGTGGAACAATCCATTTACTCAACGGCATTTGGACTCAATCTCAGAGCTCGGAGTATCACTTATCCCCCCAATAACAAGAAATTAGCTTGCGGTGATTATGGAAATGGTGCAATGGCTGAACCTTCTACGATAGATACAACTCTTAGGTTTTCACTTGATCCTTCAATTGTATGAAGCGTCTGATGT

Ace file of the UniGene sp_v2.0_unigene81274

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphopentothenoylcysteine decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RAN6_RICCO	-	-	4.0e-27	81%
FL-Next	sp=Phosphopantothenoylcysteine decarboxylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%
Blast2go	phosphopantothenoylcysteine decarboxylase	-	-	1.18842e-33	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphopantothenoylcysteine decarboxylase.	EC:4.1.1.36	-	1.18842e-33	94%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770		1.18842e-33	94%
Blast2go	Metabolic pathways	01100		1.18842e-33	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	1.18842e-33	94%
Blast2go	coenzyme A biosynthetic process	GO:0015937	Biological Process	1.18842e-33	94%
Blast2go	phosphopantothenoylcysteine decarboxylase activity	GO:0004633	Molecular Function	1.18842e-33	94%

Source	InterPros	Term	Type	Identity
Sma3	Flavoprotein	IPR003382	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SWE5

Fln msg: warning!, putative chimeric sequence! or repetitive structureUnexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 126 - 209

Fln protein: TK*VIRYCILELRQWADAMVIAPLSANTLAKLLILAVSWPMRQSTYLHSTCMGL*QASLCSSCNEYFHVEQSIYSTAFGLNLRARSITYPPNNKKLACGDYGNGAMAEPSTIDTTLRFSLDPSIV*

Protein Length: 127

Fln nts: AACAAAATAGGTGATACGGTACTGCATATTAGAACTCCGGCAATGGGCTGATGCTATGGTGATTGCTCCACTCTCAGCAAACACGCTTGCTAAGCTCTTGATCTTGGCTGTCAGTTGGCCTATGCGACAATCTACTTACTTGCATAGTACGTGCATGGGACTTTAACAAGCCTCTCTTTGTAGCTCCTGCAATGAATACTTTCATGTGGAACAATCCATTTACTCAACGGCATTTGGACTCAATCTCAGAGCTCGGAGTATCACTTATCCCCCCAATAACAAGAAATTAGCTTGCGGTGATTATGGAAATGGTGCAATGGCTGAACCTTCTACGATAGATACAACTCTTAGGTTTTCACTTGATCCTTCAATTGTATGA___AGCGTCTGATGT

Fln Alignment:

AllPineV4_rep_c136006___LELRQWADAMVIAPLSANTLAK---------LLILAVSWPMRQSTYLHSTCMGL*QASLCSSCNEYFHVEQSIYSTAFGLNLRARSITYPPNNKKLACGDYGNGAMAEPSTIDTTLR
Q9SWE5_______________IELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTL-------MWNNPFTERHLLSLDELGITL------IPPIKKRLACGDYGNGAMAEPSLIYSTVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain