SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81223

Length: 255 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81223
CGTCGTGACCTTGGCTGTCACTCATTCGAGATCTATTCGAGCAGGAGTGATTTGGGTCAACTGCTACTATGCATTTGATTCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGAATTGGCAGAGAACAGGGTCTTGATGCTCTTAAGAATTATTTGGCAGTCAAGTGTGTGATAACTCCCCTCCATGATTCACCTTGGTTGTAGAATTCTGGGTTAATGTGTTTGGGAATTGTTTCATAGCATCATATATCACG

Ace file of the UniGene sp_v2.0_unigene81223

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RKT3_RICCO	-	-	9.0e-21	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	aldehyde dehydrogenase	-	-	1.4161e-25	80%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV57

Fln msg: your sequence is shorter than subject: 68 - 248

Fln protein: VVTLAVTHSRSIRAGVIWVNCYYAFDSDAPFGGYKMSGIGREQGLDALKNYLAVKCVITPLHDSPWL*

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCGAGATCTATTCGAGCAGGAGTGATTTGGGTCAACTGCTACTATGCATTTGATTCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGAATTGGCAGAGAACAGGGTCTTGATGCTCTTAAGAATTATTTGGCAGTCAAGTGTGTGATAACTCCCCTCCATGATTCACCTTGGTTGTAG___AATTCTGGGTTAATGTGTTTGGGAATTGTTTCATAGCATCATATATCACG

Fln Alignment:

AllPineV4_rep_c135770___VTLAVTHSRSIRAGVIWVNCYYAFDSDAPFGGYKMSGIGREQGLDALKNYLAVKCVITPLHDSPWL
A9NV57_______________IDIANRFARSLRAGVVWINCFLVLGADVPMGGYKMSGIGREYGSKGLENYLQVKCVISPLQHSPWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain