SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81148

Length: 500 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene81148
CGTCGTGACCTTGGCTGTCACTCATTTGGCTTTACATTGGCAGTAATGGTAGTAGCCCTGGTGGTGGGCAGTGCTGTAGGCACGCCCAGGACAAACTTGGTATCATCTGCATGTAACGGGCAGAAGATCCCAAGCGGAAGTTCCTTTTATAGTACTCTCGGATCCCTCCTGGTGGATCTAGAGGGAAACACTGCCTCCAGCGGTTACGACTATAAAGCATCGCGAGCAGGTTCACCCACCGCCTGCCTTAAAAACCTTGGGGGCCGCATCTGGAACATTTGCGGGTACGCCATCGGTGCTCGAGTTCAGCTAACTGACTGTTTCATCCGCTACGAGCAGTACAGCTTCTAATTTAGTTATATGTTCAACGTCTGCCCAACTGCACAATACGCATATATATCTATGTTTATGTTAGTGTCAATAAAGCGTCTCACATGATTCTCTGAGCAAGAGAATCTGATGTTGTGCTATTCTAACCAGTCACTATAATAAAACTGTTC

Ace file of the UniGene sp_v2.0_unigene81148

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Embryo-abundant protein n=1 Tax=Pinus pinaster RepID=D9IWE0_PINPS	-	-	2.99878e-43	73%
FL-Next	tr=Embryo-abundant protein; Pinus pinaster (Maritime pine).	-	-	0.0	85%
Blast2go	embryo-abundant protein	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	0.0	60%
Blast2go	aspartic-type endopeptidase inhibitor activity	GO:0019828	Molecular Function	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gnk2-homologous domain	IPR002902	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D9IWE0

Fln msg: your sequence is shorter than subject: 102 - 129

Fln protein: MVVALVVGSAVGTPRTNLVSSACNGQKIPSGSSFYSTLGSLLVDLEGNTASSGYDYKASRAGSPTACLKNLGGRIWNICGYAIGARVQLTDCFIRYEQYSF*

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGCTTTACATTGGCAGTA_-_ATGGTAGTAGCCCTGGTGGTGGGCAGTGCTGTAGGCACGCCCAGGACAAACTTGGTATCATCTGCATGTAACGGGCAGAAGATCCCAAGCGGAAGTTCCTTTTATAGTACTCTCGGATCCCTCCTGGTGGATCTAGAGGGAAACACTGCCTCCAGCGGTTACGACTATAAAGCATCGCGAGCAGGTTCACCCACCGCCTGCCTTAAAAACCTTGGGGGCCGCATCTGGAACATTTGCGGGTACGCCATCGGTGCTCGAGTTCAGCTAACTGACTGTTTCATCCGCTACGAGCAGTACAGCTTCTAA___TTTAGTTATATGTTCAACGTCTGCCCAACTGCACAATACGCATATATATCTATGTTTATGTTAGTGTCAATAAAGCGTCTCACATGATTCTCTGAGCAAGAGAATCTGATGTTGTGCTATTCTAACCAGTCACTATAATAAAACTGTTC

Fln Alignment:

AllPineV4_rep_c135322___HSFGFTXXXXXXXXXXXXXXXTPRTNLVSSACNGQKIPSGSSFYSTLGSLLVDLEGNTASSGYDYKASRAGSP-----------------TACLKNLGGRIWNICGYAIGARVQLTDCFIRYEQYSF
D9IWE0_______________YSFGFTLAVMVVALVVGSAVGTPRTNLVSSACNGQKIQSGSSFYSTLGSLLVDLEGNTASSGYDYKASRAGSPTAYGRAVCNQGLSQSDCTACLKNLGGRIWNICGYAIGARVQLTDCFIRYEQYSF

SNPs (tot: 3)

Position	A %	C %	T %	Probability
354		33	66	0.997452
358		33	66	0.997452
359	66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain