SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81131

Length: 1074 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene81131

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	P40-like protein n=2 Tax=Solanum tuberosum RepID=Q308A0_SOLTU	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	74%
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0C9

Fln msg: Overlapping hits, possible frame ERROR between 587 and 538, Distance to subject end: 17 aas, your sequence is shorter than subject: 287 - 319

Fln protein: MAQKTGGLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPLATGDPS*SFAQYTGAHAIAGRHTPGxxxxxxxxxxxxxxxxxxTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYREADEAKEHEEEEAPVAEYTADIPDAQWGVPEPSAIPAVPALAVSDWPGAPGPIAAEGWDSAPAPLPSVAGWMLHRSLVFRL

Protein Length: 288

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGAGAAAATACCACTTTGGAAGTTAGGGTTAGGTCTAAAGGCGTGAGGACAAAAGTTTAGGGTTTTAGAGTCGGTCGTGTTCGCGTCTGTCAAATTTGTTTTCGGCAGGGCTTTCTCATGCTTTAGGTTTTGCAAAAGCTCGGAGGAAAGGAGAGAGTAACAGTGAGGTGTGCAGGTTGAGATCTGAAA_-_ATGGCGCAGAAGACGGGGGGTTTGTCTCAGAAGGAGGCAGACATTCAGATGATGCTTGCTGCCGATGTTCATCTCGGCACCAAAAACTGCGATTTTCAGATGGAGCGTTATGTGTACAAGAGGCGTTCTGATGGGATATTCATCATCAATTTAGGTAAGACTTGGGAAAAGCTTCAGCTCGCTGCAAGGGTGATTGTTGCAATTGAAAACCCACAGGATATTATTGTCCAGTCTGCAAGGCCATTGGCAaCCGGGGAcCCGTCTTGAAGTTTTGCTCAATACACTGGAGCACATGCAATAGCCGGCAGGCACACTCCTGGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTGATCCAAGGACTGACCATCAGCCCATAAGAGAAGCGGCCCTAGGTAATATTCCAACCATTGCTTTCTGTGACACGGATTCACCAATGAAACATGTGGATATTGGGATACCTGCCAACAACAAGGGAAAACATAGCATTGGATGCCTGTTTTGGATGCTTGCAAGAATGGTTCTGCAGATGCGAGGAACCATCCTTCCTGGTCATAAATGGGACATCATGGTTGATTTGTTCTTCTACAGAGAGGCCGACGAAGCTAAGGAGCACGAAGAGGAAGAGGCCCCTGTTGCTGAATATACTGCTGATATTCCAGATGCACAATGGGGGGTCCCTGAACCTAGTGCAATCCCTGCTGTGCCTGCGTTGGCCGTGTCTGACTGGCCCGGTGCTCCAGGTCCAATCGCTGCTGAAGGATGGGACTCAGCACCTGCTCCATTGCCATCAGTGGCAGGGTGGATGCTTCATCGATCCCTAGTATTCCGGCTG

Fln Alignment:

AllPineV4_rep_c135232___MAQKTGGLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPLATGDPS*SFAQYTGAHAIAGRHTPGVYKSDxxxxxxxxxxxxRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR----------------XXXXXXXXXXXXXXXXXXXXDIPDAQWGVPEPSAIPAVPALAVSDWPGAPGPIAAEGWDSAPAPLPSVAGW
A9P0C9_______________MAQKMGGLSQKEADIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVL-KFAQYTGAHAIAGRHTPGTFTNQxxxxxxxxxxxxRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYREPEEAKEHEDEEAPVAEYTADYTAPALALPGDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIAAEGWDTAPAPLPPAAEW

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
80	50	16	16	16	0.989027
85		16	33	50	1.0
87	50	33	16		1.0
88	50		50		1.0
89		40	60		1.0
90			66	16	0.988814
91		33		66	1.0
92	16			66	0.988814
101			80	20	0.995493
105			80	20	0.995493
106		20		80	0.995493
435			66	33	0.997454
711			66	33	0.997452
712	33	66			0.997452
713		66		33	0.997452
714	66		33		0.997452
715	66		33		0.997452
716		66	33		0.997452
719	75			25	0.996473
720		75	25		0.996473
721	75		25		0.996473
722	75		25		0.996473
867	66		33		0.997459
908		66	33		0.997452
909		66		33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain