SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81130

Length: 755 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene81130 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L11-1 n=51 Tax=Embryophyta RepID=RL111_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	60s ribosomal protein l11	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	vacuole	GO:0005773	Cellular Component	98%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	98%
Blast2go	chloroplast	GO:0009507	Cellular Component	98%
Blast2go	membrane	GO:0016020	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L5	IPR002132	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
560		83	16		0.999991
565		83		16	0.999991
566	66		25		1.0
570		8	16	66	0.999991
573	27			72	1.0
574	81		18		0.999994
575			30	70	1.0
576			10	90	0.90298
577		90		10	0.90298
580			10	70	0.999999
581	30			70	1.0
583	80		20		0.999996
585			12	87	0.992554
602	85			14	0.993533
603	85		14		0.993533
611		16	83		0.994512
617	16			83	0.994512
618			16	83	0.994512
619		83	16		0.994512
622	20			80	0.995493
624		80	20		0.995494
625	20	80			0.995493
627			20	80	0.995493
648		75	25		0.996473
652			25	75	0.996476
656	25			75	0.996474
657			25	75	0.996474
658			25	75	0.996476
662		25		75	0.996473
663			25	75	0.996474
664	25			75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain