SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81082

Length: 504 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene81082
CGCGTGACCTTGGCTGTCACTCATGGGTGATCACAAAAGAGTTTTTAGACAAGCACCAAATTGACTTTGTTGCTCATGATGCCCTTCCATATGCCGATGCAAGTGGAGCAGGCAATGATGTGTATGAATATATCAAATCAATTGGCAAATTTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAATATGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAATAATCCAAGTGGTTGTGAGATGAGGATGTAGGGATGTGTGGAGGGTAATATTCTTTTGTTATATGTGAAGGCTATGTGGTGTGGATAAAATTGTTGAAGCGCGCCATCCTTTTGGCAGAGCAGGATTTTGCTTGGTTAAATTTGAAGGGGTTGATCTCGTGCC

Ace file of the UniGene sp_v2.0_unigene81082 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTP:phosphorylcholine cytidylyltransferase [Arabidopsis thaliana] dbj\|BAC01277.1\| CTP:phosphorylcholine cytidylyltransferase [Arabidopsis thaliana]	-	-	8.40779e-45	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	cholinephosphate cytidylyltransferase	-	-	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 114 - 337

Fln protein: RDLGCHSWVITKEFLDKHQIDFVAHDALPYADASGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVK*

Protein Length: 115

Fln nts: CGCGTGACCTTGGCTGTCACTCATGGGTGATCACAAAAGAGTTTTTAGACAAGCACCAAATTGACTTTGTTGCTCATGATGCCCTTCCATATGCCGATGCAAGTGGAGCAGGCAATGATGTGTATGAATATATCAAATCAATTGGCAAATTTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAATATGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAAGCAATTGAGGGTCAACATGAGCATAACTAAATTGCGTCAGAAGGTGAAATAATCCAAGTGGTTGTGAGATGAGGATGTAGGGATGTGTGGAGGGTAATATTCTTTTGTTATATGTGAAGGCTATGTGGTGTGGATAAAATTGTTGAAGCGCGCCATCCTTTTGGCAGAGCAGGATTTTGCTTGGTTAAATTTGAAGGGGTTGATCTCGTGCC

Fln Alignment:

AllPineV4_rep_c135032___WVITKEFLDKHQIDFVAHDALPYADASGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVK
B8LQQ2_______________WVITKEFLDKHQIDYVAHDALPYADTSGAGNDVYEYIKSIGKFKETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKEKQLRVNMSITKLRQKVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain