SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81014

Length: 265 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81014
CGTCGTGACCTTGGCTGTCACTCAAGAGCGTTTCCGGACAATTTCGTGAGCTTGCTGTCGTCATGCTATGGGTATTCTTCTGGTGTACGATGTCACGGATGAATCATCATTTAACAACATTCGAAACTGGATAAAGAATATTGAGCAGCATGCCTCTGATAATGTGAACAAAATACTGGTTGGCAACAAGGCTGATATGGATCAGAGTAAGAGAGCTGTCTCAACTGAACGCGGTCAAGCACTTGCAGATGAGTATGGCATTAAG

Ace file of the UniGene sp_v2.0_unigene81014

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8QS43_SELML	-	-	6.0e-33	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	rab family gtpase	-	-	1.079e-42	92%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR012335	-	-
Sma3		IPR013753	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ71

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 88 - 216

Fln protein: VVTLAVTQERFRTIS*ACCRHAMGILLVYDVTDESSFNNIRNWIKNIEQHASDNVNKILVGNKADMDQSKRAVSTERGQALADEYGIK

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGCGTTTCCGGACAATTTCGTGAGCTTGCTGTCGTCATGCTATGGGTATTCTTCTGGTGTACGATGTCACGGATGAATCATCATTTAACAACATTCGAAACTGGATAAAGAATATTGAGCAGCATGCCTCTGATAATGTGAACAAAATACTGGTTGGCAACAAGGCTGATATGGATCAGAGTAAGAGAGCTGTCTCAACTGAACGCGGTCAAGCACTTGCAGATGAGTATGGCATTAAG

Fln Alignment:

AllPineV4_rep_c134733___QERFRTIS*ACCRHAMGILLVYDVTDESSFNNIRNWIKNIEQHASDNVNKILVGNKADMDQSKRAVSTERGQALADEYGIK
C0PQ71_______________QERFRTITTAYYRNAMGILLVYDVTDESSFNNIRNWIKNIEQHASDNVNKILVGNKADMDESKRAVSTARGQELADEYGIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain