SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80950

Length: 360 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene80950
CTATTGTAGTAATTATTTTAATTGTAAGTTCATTCTTTAAATATTCTCATGACGAGGAATCGACTGATGACCAAGAGGAGACAGGATGGAAGTACATTCATGGAGATGTCTTCAGATATCCTCCATACAAATCTTTGTTTTGTGCTGTTCTTGGTTCTGGGACTCAGCTTTTTACCCTGCCATATTTATCTTCATGCTTGCACTGGTGGGTGTTTTCTATCCATACAACAGGGGAGCTCTATATACTGCCCTTGTGGTTATATATGCTCTCACATCTGGAATTGCAGGATATACTGCAGCCTCCTTCTATCGTCAACTTGACGGAACAAACTGGGTACGCAATCTGTTGTTGACAGGTTG

Ace file of the UniGene sp_v2.0_unigene80950

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative syntaxin SYP111 (ISS) [Ostreococcus tauri] emb\|CAL57055.1\| putative syntaxin SYP111 (ISS) [Ostreococcus tauri]	-	-	1.0e-27	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	phagocytic receptor 1b-like	-	-	0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX51

Fln msg: your sequence is shorter than subject: 117 - 355

Fln protein: IVVIILIVSSFFKYSHDEESTDDQEETGWKYIHGDVFRYPPYKSLFCAVLGSGTQLFTLPYLSSCLHWWVFSIHTTGELYILPLWLYMLSHLELQDILQPPSIVNLTEQTGYAICC*

Protein Length: 118

Fln nts: CTATTGTAGTAATTATTTTAATTGTAAGTTCATTCTTTAAATATTCTCATGACGAGGAATCGACTGATGACCAAGAGGAGACAGGATGGAAGTACATTCATGGAGATGTCTTCAGATATCCTCCATACAAATCTTTGTTTTGTGCTGTTCTTGGTTCTGGGACTCAGCTTTTTACCCTGCCATATTTATCTTCATGCTTGCACTGGTGGGTGTTTTCTATCCATACAACAGGGGAGCTCTATATACTGCCCTTGTGGTTATATATGCTCTCACATCTGGAATTGCAGGATATACTGCAGCCTCCTTCTATCGTCAACTTGACGGAACAAACTGGGTACGCAATCTGTTGTTGA___CAGGTTG

Fln Alignment:

AllPineV4_rep_c134391___SSFFKYSHDEESTDDQEETGWKYIHGDVFRYPPYKSLFCAVLGSGTQLFTLPYLSSCLHWWVFSIHTTGELYILPLWLYMLSHLELQDILQPPSIVNLTEQTGYAIC
A9NX51_______________NDFIKYSHDEESTDDQEETGWKYIHGDVFRYPPHKSLFCAVLGSGTQLFTLAIFIFMLALVGVSTHTTGELYTQPLWLYMPLHLALQVTLQPPSIVSLKDQTGCGIC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain