SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80932

Length: 463 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80932
CGTCGTGACCTTGGCTGTCACTCAATCTTCTTGGCCCTCTGCTGCAGAGGTTGAGAGAGTTAGAAGGTCGGCAGCTGCTTTGGACAGGATGCGATGTAGAAAAGTAAGCGTGGTGGCCTTTGCTTACGAGGAATCTGTCCTCTTGGCGCTCACATTGACCATCAGGGTGGGACTGTGACGGCAATGACAATAAATAGGGGCATACTTTTAGGTTTTGTACCCTCAGGAGACTGCAAGGTTTTGCTCCACTCTGGTCAGTTTGGTGGAGAAGTGCAGTTCAGAATTGACATTGATCTATGCAAAGGAGATCAAATTGGTGTAGATGAAGAATGTGGATGGGGGCGCTATGCAAGAGGCGCTGCATTTGCTCTAAAAAGGGCGGGTAAACATTTATATCAGGGTATTATCGGGTTTATTGAGGGATCAGGATCTTTTGATAGTTCAGGCATTAGCTCTTCGGCTG

Ace file of the UniGene sp_v2.0_unigene80932

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	galactokinase [Arabidopsis thaliana] sp\|Q8VYG2.1\|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gb\|AAL59925.1\| putative galactokinase [Arabidopsis thaliana] gb\|AAM20366.1\| putative galactokinase [Arabidopsis thal	-	-	2.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	galactokinase	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactokinase.	EC:2.7.1.6	-	0.0	68%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		68%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		68%
Blast2go	Metabolic pathways	01100		68%
Blast2go	Galacturonokinase.	EC:2.7.1.44	-	68%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate phosphorylation	GO:0046835	Biological Process	68%
Blast2go	D-galacturonate metabolic process	GO:0046396	Biological Process	68%
Blast2go	galactokinase activity	GO:0004335	Molecular Function	68%
Blast2go	galacturonokinase activity	GO:0047912	Molecular Function	68%

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS15

Fln msg: Distance to subject end: 275 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 121 - 423

Fln protein: KSKRGGLCLRGICPLGAHIDHQGGTVTAMTINRGILLGFVPSGDCKVLLHSGQFGGEVQFRIDIDLCKGDQIGVDEECGWGRYARGAAFALKRAGKHLYQGIIGFIEGSGSFDSSGISSSA

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCTTGGCCCTCTGCTGCAGAGGTTGAGAGAGTTAGAAGGTCGGCAGCTGCTTTGGACAGGATGCGATGTAGAAAAGTAAGCGTGGTGGCCTTTGCTTACGAGGAATCTGTCCTCTTGGCGCTCACATTGACCATCAGGGTGGGACTGTGACGGCAATGACAATAAATAGGGGCATACTTTTAGGTTTTGTACCCTCAGGAGACTGCAAGGTTTTGCTCCACTCTGGTCAGTTTGGTGGAGAAGTGCAGTTCAGAATTGACATTGATCTATGCAAAGGAGATCAAATTGGTGTAGATGAAGAATGTGGATGGGGGCGCTATGCAAGAGGCGCTGCATTTGCTCTAAAAAGGGCGGGTAAACATTTATATCAGGGTATTATCGGGTTTATTGAGGGATCAGGATCTTTTGATAGTTCAGGCATTAGCTCTTCGGCTG

Fln Alignment:

AllPineV4_rep_c134302___ICPLGAHIDHQGGTVTAMTINRGILLGFVPSGDCKVLLHSGQFGGEVQFRIDIDLCKGDQIGVDEECGWGRYARGAAFALKRAGKHLYQ
B8LS15_______________ICPLGAHIDHQGGTVTAMAINRGILLGFVPSEDCKVLLRSGQFGGEVQFRIDNDLCKGDQIGVDEECGWGRYARGAAFALQRAGKHLYQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
184			66	33	0.997464
187	66		33		0.997467
192	66	33			0.997467
195	66		33		0.997476
196	66		33		0.997476
197	66	33			0.997476
200	66			33	0.997476
201		33	66		0.997471
202	33		66		0.997476
203		33	66		0.997476
204			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain