SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80900

Length: 524 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80900

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Defensin-1 n=1 Tax=Pinus sylvestris RepID=DEF1_PINSY	-	-	3.0e-33	78%
FL-Next	sp=Defensin-1; Pinus sylvestris (Scots pine).	-	-	0.0	89%
Blast2go	defensin	-	-	7.72115e-43	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	7.72115e-43	81%
Blast2go	defense response to Gram-negative bacterium	GO:0050829	Biological Process	7.72115e-43	81%
Blast2go	extracellular region	GO:0005576	Cellular Component	7.72115e-43	81%

Source	InterPros	Term	Type	Identity
Sma3	Gamma Purothionin	IPR008177	-	-
Sma3	Gamma thionin	IPR008176	-	-
Sma3	Knottin	IPR003614	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
129		75		25	0.996473
148		25		75	0.996473
206		80		20	0.995498
253		20	80		0.995493
285	80		20		0.995493
362		20		80	0.995493
372		20	80		0.995493
390	16			83	0.994514
395		20		80	0.995497
452		25		75	0.996479

SSRs (tot: 1)

Start position	End position	Sequence	Length
386	399	ATT ATT ATT ATT AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain