SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80875

Length: 821 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	leucoanthocyanidin deoxygenase c	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVW2

Fln msg: Overlapping hits, possible frame ERROR between 367 and 364, Distance to subject end: 88 aas, your sequence is shorter than subject: 269 - 359

Fln protein: MGNSDPRNIYTAAEHCRSESFSTFLFGESDRVVSNWSVIMAPARVESLALSGLAAIPAEYVRPVEERPTDCVLNLKGGADEDKGPQIPVVDVAGWDSADEEVTKEIGRQVAKASRExxxMQLLNHGISETLIERLQSAGKAFFDLPVEEKEKYANDHAAGKIAGEVTDAYGREIRKLVTKILSTLSLDLGVEEDGMERVLGGECLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLYKDDKWVTAKCIPGNSRADCT

Protein Length: 270

Fln nts: ACATGGGCCACTT_-_ATGGGGAACTCAGACCCACGCAATATATACACTGCTGCAGAGCACTGTCGATCTGAGTCTTTTTCCACTTTCTTGTTCGGTGAATCCGATAGAGTAGTTTCCAACTGGTCGGTCATCATGGCACCAGCGAGAGTGGAGAGCCTGGCATTGAGCGGCCTGGCTGCAATTCCTGCCGAGTACGTGAGACCGGTGGAGGAGAGACCCACCGACTGCGTTCTCAACTTGAAAGGAGGAGCAGATGAGGACAAAGGCCCGCAGATTCCAGTGGTGGACGTTGCCGGATGGGATTCTGCGGACGAGGAGGTCACGAAGGAGATCGGGCGTCAGGTGGCGAAGGCGAGCAGAGAGxxxxxxxxxATGCAGTTGCTGAACCACGGAATATCTGAGACTCTGATAGAGCGACTTCAGTCAGCGGGGAAGGCGTTCTTCGATCTCCCGGTTGAGGAGAAAGAGAAGTACGCGAACGACCACGCAGCGGGGAAGATTGCGGGCGAAGTGACAGACGCCTACGGAAGGGAGATACGGAAGCTCGTAACCAAAATCCTGAGCACGCTTTCATTGGATCTGGGCGTGGAGGAAGACGGAATGGAGCGCGTGCTCGGCGGTGAATGTCTGGAAATGCAATTGAAAATAAATTACTATCCCCGCTGTCCACAACCGGAGCTCGCTCTCGGAGTGGAGGCACACACCGACATAAGCGCGCTCACATTTCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTACAAAGATGACAAATGGGTCACCGCCAAATGCATTCCCGGCAATTCCAGAGCGGACTGCACAGA

Fln Alignment:

AllPineV4_rep_c134041___MAPARVESLALSGLAAIPAEYVRPVEERPTDCVLNLKGGADEDKGPQIPVVDVAGWDSADEEVTKEIGRQVAKASREWxVMQLLNHGISETLIERLQSAGKAFFDLPVEEKEKYANDHAAGKIAG------------------------------------------EVTDAYGREIRKLVTKILSTLSLDLGVEEDGMERVLGGECLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLYKDDKWVTAKCIPG
A9NVW2_______________MAPARVESLALSGLAAIPPEYVRPVEERPTECVLKVKGV--EDEGPQIPVVDIAGWDSADEEIKKEIGRQVAKASREWxVMQLLNHGISEILIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSSDLGVEEERLERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
217	85		14		0.993533
227		85		14	0.993533
290			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain