SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80821

Length: 641 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80821 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastid fructose 1,6 bisphosphate aldolase class 1 n=2 Tax=Gossypium arboreum RepID=A6Y873_GOSAR	-	-	1.0e-13	73%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	plastidic aldolase	-	-	3.60716e-16	77%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
370	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain