SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80799

Length: 360 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80799
CGTCGTGACCTTGGCTGTCACTCAATCATTCATATTTCTCCGTGTTTTCTTCCCTTAGGATCAGTCTGTAGCCTGTTCTTTTGCAGACGGAGTAATTGGTGATCGTTTCTGCAGTTCAAATGGAAGCGAGAATGCTGTGGATTGCTCTTCTTGTATTTCTTATATCATGGAAAAATGCAGACGGCAGGAAGATTGTCATTTTCGAACATTCTGGGCCACTGTTGATAAGGCAGGAGGTTTTCAATCTGGGAAATGGCATCTTGATTAGGAAGGAGCTCAACGAGTAGATCTTGGTGGAGACATGCCAGAATCAGTTCCAAGGCTTTCAAGAGTGAATCAGAAAATTCTGAAGGTCTGTGG

Ace file of the UniGene sp_v2.0_unigene80799

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	unknown [Picea sitchensis]	-	-	2.27849e-23	68%

Source	InterPros	Term	Type	Identity
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin-like	IPR011001	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUE1

Fln msg: Overlapping hits, possible frame ERROR between 275 and 269, Distance to subject end: 328 aas, your sequence is shorter than subject: 80 - 430

Fln protein: MEARMLWIALLVFLISWKNADGRKIVIFEHSGPLLIRQEVFNLGNGILIxxxxQRVDLGGDMPESVPRLSRVNQKILKVC

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATTCATATTTCTCCGTGTTTTCTTCCCTTAGGATCAGTCTGTAGCCTGTTCTTTTGCAGACGGAGTAATTGGTGATCGTTTCTGCAGTTCAA_-_ATGGAAGCGAGAATGCTGTGGATTGCTCTTCTTGTATTTCTTATATCATGGAAAAATGCAGACGGCAGGAAGATTGTCATTTTCGAACATTCTGGGCCACTGTTGATAAGGCAGGAGGTTTTCAATCTGGGAAATGGCATCTTGATTxxxxxxxxxxxxCAACGAGTAGATCTTGGTGGAGACATGCCAGAATCAGTTCCAAGGCTTTCAAGAGTGAATCAGAAAATTCTGAAGGTCTGTGG

Fln Alignment:

AllPineV4_rep_c133624___MEARMLWIALLVFLISWKNADGRKIVIFEHS---------------------GPLLIRQEVFNLGNGILIRxxAQRVDLGGDMPESVPRLSRVNQKI
A9NUE1_______________MEARMLWIALLVFLITWKNADARKIVIFEHSEIPVRGRFSLHFPSVQTNCGNGPLLIRQEVFNLANGILIRxxAQRVVFGGDMPESVPRLSRVNQKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain