SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80797

Length: 405 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80797
CGTCGTGACCTTGGCTGTCACTCATGTTGAAGAGAAAGGGGAGGAAAAGTGGCGGCTTTGAAGAATGAGGGTAAAAGTATGATGGATAGCGTTGTGATGTTGGCTGTGACTGTGAGATTGAGGATGAAGATGTGGCCCAGGGGAAAACCAATTCTGCTCCAAAGAAGAAAGGATGGTTTTCTTCAATCTTCCAAAGTGTTGCAGGAAAATCAGTTCTTGAAAAATCAGACTTGGAGCCAGCTCTGAAAGCACTCAAGGATCGATTTATGACGAAGAATGTGGCAGAGGAGATTGCTGAAAAGCTTTGCGAATCAGTAGCAGCTAGTCTTGAAGGCAAAAAGTTGGGTTCTTTCACAAGAGTTTCTACTACTGTACAGGCAGCAATGGAAGAAGCTCTTCTTCGAA

Ace file of the UniGene sp_v2.0_unigene80797

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Signal recognition particle receptor alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9STS5_RICCO	-	-	4.0e-35	76%
FL-Next	tr=Signal recognition particle receptor alpha subunit, putative; Ricinus communis (Castor bean).	-	-	0.0	76%
Blast2go	signal recognition particle receptor subunit alpha	-	-	6.65701e-41	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	6.65701e-41	86%
Blast2go	transport	GO:0006810	Biological Process	6.65701e-41	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	6.65701e-41	86%

Source	InterPros	Term	Type	Identity
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Signal recognition particle receptor, alpha subunit, N-terminal	IPR007222	-	-
Sma3	Signal recognition particle, SRP54 subunit, helical bundle	IPR013822	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9STS5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 229 aas, your sequence is shorter than subject: 134 - 618

Fln protein: S*PWLSLMLKRKGRKSGGFEE*G*KYDG*RCDVGCDCEIEDEDVAQGKTNSAPKKKGWFSSIFQSVAGKSVLEKSDLEPALKALKDRFMTKNVAEEIAEKLCESVAASLEGKKLGSFTRVSTTVQAAMEEALLR

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGAAGAGAAAGGGGAGGAAAAGTGGCGGCTTTGAAGAATGAGGGTAAAAGTATGATGGATAGCGTTGTGATGTTGGCTGTGACTGTGAGATTGAGGATGAAGATGTGGCCCAGGGGAAAACCAATTCTGCTCCAAAGAAGAAAGGATGGTTTTCTTCAATCTTCCAAAGTGTTGCAGGAAAATCAGTTCTTGAAAAATCAGACTTGGAGCCAGCTCTGAAAGCACTCAAGGATCGATTTATGACGAAGAATGTGGCAGAGGAGATTGCTGAAAAGCTTTGCGAATCAGTAGCAGCTAGTCTTGAAGGCAAAAAGTTGGGTTCTTTCACAAGAGTTTCTACTACTGTACAGGCAGCAATGGAAGAAGCTCTTCTTCGAA

Fln Alignment:

AllPineV4_rep_c133613___VGCDCEIEDEDVAQGKTNSAPKKKGWFSSIFQSVAGKSVLEKSDLEPALKALKDRFMTKNVAEEIAEKLCESVAASLEGKKLGSFTRVSTTVQAAMEEALLR
B9STS5_______________ISSDSESEDEEVGK-ESKPGAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain