SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80787

Length: 402 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene80787
GTTCCAGAAAGTTTCCCGATTCTTTTCAAGACTCAGGAGTAAACGCTTACATTGCTGTTTTTGAAGATAGGTTTACTTCACGTCTTTTCCAATAATGTACCATCTTTGGGTGTTTGTTGTAGCCCATAAGAGAAGCGGCCCTAGGTAATATTCCAACCATTGCTTTCTGTGACACGGATTCACCAATGAAGCATGTGGATATTGGGATACCTGCCAACAACAAGGGAAAACATAGCATTGGATGCCTGTTTTGGATGCTTGCAAGAATGGTTCTGCAGATGCGAGGAACCATCCTTCCTGGTCATAAATGGGACATCATGGTAAGTGCTTGCATATTTTGTGGTTATAATTTCAATTTCGTTATTAAATAATTTGTGCATATGGATTTTATCACTCTTTCTG

Ace file of the UniGene sp_v2.0_unigene80787 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein sa, putative n=1 Tax=Ricinus communis RepID=B9SVH0_RICCO	-	-	7.0e-31	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	40s ribosomal protein	-	-	1.87396e-41	98%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0C9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 94 aas, your sequence is shorter than subject: 123 - 319

Fln protein: SRKFPDSFQDSGVNAYIAVFEDRFTSRLFQ*CTIFGCLL*PIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVSACIFCGYNFNFVIK*

Protein Length: 124

Fln nts: GTTCCAGAAAGTTTCCCGATTCTTTTCAAGACTCAGGAGTAAACGCTTACATTGCTGTTTTTGAAGATAGGTTTACTTCACGTCTTTTCCAATAATGTACCATCTTTGGGTGTTTGTTGTAGCCCATAAGAGAAGCGGCCCTAGGTAATATTCCAACCATTGCTTTCTGTGACACGGATTCACCAATGAAGCATGTGGATATTGGGATACCTGCCAACAACAAGGGAAAACATAGCATTGGATGCCTGTTTTGGATGCTTGCAAGAATGGTTCTGCAGATGCGAGGAACCATCCTTCCTGGTCATAAATGGGACATCATGGTAAGTGCTTGCATATTTTGTGGTTATAATTTCAATTTCGTTATTAAATAATTTGTGCATATGGATTTTATCACTCTTTCTG

Fln Alignment:

AllPineV4_rep_c133547___PIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMV
A9P0C9_______________PIREAALGNIPTIAFCDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain